

PFRMAT ABF1
TARGET T0021
AUTHOR 4926-8342-4702 D.J. Osguthorpe, University of Bath, djosg@mgu.bath.ac.uk
REMARK     t0021; KorB C-terminal domain from E.coli; 64 a.a.
REMARK Ab initio folding using simplified geometry model with specifically
REMARK parameterised flexible internals and other potentials.
REMARK Molecular dynamics with cooling used as search technique.
REMARK Methods currently working to around 100 atoms
REMARK Method development specifically excluded small proteins with
REMARK disulphide bridges because of foldability problems of such proteins.
REMARK All model atoms have been submitted - however only CA atoms and
REMARK some CB atoms and SG atoms will correspond directly to standard
REMARK PDB atoms - rest of atoms correspond to centres of coordinates of
REMARK groups of PDB atoms e.g. OG corresponds to centre of CG, OD1, OD2
REMARK for ASP.
REMARK Atoms corresponding directly to PDB atoms are labelled 1.0 in
REMARK occupancy field, 0.0 for those not corresponding directly to PDB atoms
REMARK Expected CA RMS from correct fold is 4-6 angstroms
REMARK (i.e. simulations of known structures fluctuate at this level from
REMARK       the X-ray structure)
REMARK I have observed mis-folds with similar CA RMS values - RMS does not
REMARK discriminate between folds at this level - need to use your eyes!!
BEGDAT 3.1    1  .35
REMARK   check of folding parameters                                        36.0
REMARK  DATE:                                                                   
ATOM      1  CA  GLYN    1      20.639  -2.032  33.460   .00  1.00
ATOM      2  CA  ALA     2      18.255  -2.829  36.355   .00  1.00
ATOM      3  CB  ALA     2      18.634  -3.447  37.704   .00  1.00
ATOM      4  CA  LYS     3      15.429   -.535  37.446   .00  1.00
ATOM      5  CB  LYS     3      14.244   -.352  36.547   .00  1.00
ATOM      6  CG  LYS     3      13.550   1.435  34.838   .00   .00
ATOM      7  ND  LYS     3      11.754   2.268  33.233   .00   .00
ATOM      8  CA  GLU     4      14.494   -.614  41.093   .00  1.00
ATOM      9  CB  GLU     4      14.148    .949  42.028   .00   .00
ATOM     10  OG  GLU     4      16.541   1.663  43.147   .00   .00
ATOM     11  CA  PRO     5      11.201  -2.204  40.150   .00  1.00
ATOM     12  CB  PRO     5      10.367  -1.408  39.318   .00   .00
ATOM     13  CA  ASP     6      13.125  -5.000  38.298   .00  1.00
ATOM     14  CB  ASP     6      13.856  -4.657  37.003   .00  1.00
ATOM     15  OG  ASP     6      12.610  -4.362  35.479   .00   .00
ATOM     16  CA  PRO     7      15.612  -5.512  41.186   .00  1.00
ATOM     17  CB  PRO     7      16.603  -4.618  41.587   .00   .00
ATOM     18  CA  ASP     8      12.726  -5.964  43.681   .00  1.00
ATOM     19  CB  ASP     8      11.856  -4.768  44.089   .00  1.00
ATOM     20  OG  ASP     8      12.913  -3.402  45.017   .00   .00
ATOM     21  CA  LYS     9      10.901  -8.369  41.368   .00  1.00
ATOM     22  CB  LYS     9      10.471  -7.825  39.999   .00  1.00
ATOM     23  CG  LYS     9       8.600  -6.202  39.090   .00   .00
ATOM     24  ND  LYS     9       6.199  -5.575  38.689   .00   .00
ATOM     25  CA  LEU    10      14.072 -10.472  40.879   .00  1.00
ATOM     26  CB  LEU    10      15.273  -9.814  40.236   .00  1.00
ATOM     27  CG  LEU    10      15.335  -9.791  38.343   .00   .00
ATOM     28  CA  LYS    11      14.798 -10.626  44.564   .00  1.00
ATOM     29  CB  LYS    11      15.016  -9.323  45.319   .00  1.00
ATOM     30  CG  LYS    11      17.129  -7.929  45.862   .00   .00
ATOM     31  ND  LYS    11      17.996  -5.614  45.714   .00   .00
ATOM     32  CA  LYS    12      11.268 -11.990  45.069   .00  1.00
ATOM     33  CB  LYS    12      10.014 -11.145  44.907   .00  1.00
ATOM     34  CG  LYS    12       9.406  -9.837  47.083   .00   .00
ATOM     35  ND  LYS    12       7.834  -8.537  48.086   .00   .00
ATOM     36  CA  ALA    13      11.605 -14.613  42.363   .00  1.00
ATOM     37  CB  ALA    13      12.156 -14.266  40.987   .00  1.00
ATOM     38  CA  ILE    14      14.678 -16.058  43.978   .00  1.00
ATOM     39  CB  ILE    14      16.479 -14.569  44.331   .00   .00
ATOM     40  CA  VAL    15      12.875 -16.433  47.345   .00  1.00
ATOM     41  CB  VAL    15      12.499 -14.759  48.224   .00   .00
ATOM     42  CA  GLN    16       9.919 -18.245  45.723   .00  1.00
ATOM     43  CB  GLN    16       8.885 -17.534  44.453   .00   .00
ATOM     44  CG  GLN    16       7.007 -15.922  44.211   .00   .00
ATOM     45  CA  VAL    17      12.040 -20.783  43.926   .00  1.00
ATOM     46  CB  VAL    17      13.470 -20.107  42.828   .00   .00
ATOM     47  CA  GLU    18      13.320 -21.757  47.318   .00  1.00
ATOM     48  CB  GLU    18      14.307 -20.587  48.414   .00   .00
ATOM     49  OG  GLU    18      16.518 -20.073  47.004   .00   .00
ATOM     50  CA  HIS    19       9.906 -23.047  48.418   .00  1.00
ATOM     51  CB  HIS    19       8.842 -22.218  49.152   .00  1.00
ATOM     52  CG  HIS    19       6.526 -23.611  49.451   .00   .00
ATOM     53  CA  ASP    20       8.868 -24.600  45.094   .00  1.00
ATOM     54  CB  ASP    20       8.896 -23.705  43.875   .00  1.00
ATOM     55  OG  ASP    20       7.670 -22.197  43.850   .00   .00
ATOM     56  CA  GLU    21      11.756 -27.010  45.087   .00  1.00
ATOM     57  CB  GLU    21      11.806 -28.566  46.125   .00   .00
ATOM     58  OG  GLU    21      11.353 -29.658  48.593   .00   .00
ATOM     59  CA  ARG    22      14.265 -28.190  42.410   .00  1.00
ATOM     60  CB  ARG    22      15.695 -28.559  42.829   .00  1.00
ATOM     61  CG  ARG    22      18.156 -28.596  42.127   .00   .00
ATOM     62  ND  ARG    22      19.751 -29.968  40.971   .00   .00
ATOM     63  CA  PRO    23      12.171 -31.287  41.528   .00  1.00
ATOM     64  CB  PRO    23      12.071 -32.326  42.487   .00   .00
ATOM     65  CA  ALA    24       8.898 -29.220  41.289   .00  1.00
ATOM     66  CB  ALA    24       8.793 -27.909  42.045   .00  1.00
ATOM     67  CA  ARG    25       9.530 -28.187  37.706   .00  1.00
ATOM     68  CB  ARG    25       8.244 -27.808  36.981   .00  1.00
ATOM     69  CG  ARG    25       6.449 -29.103  35.869   .00   .00
ATOM     70  ND  ARG    25       5.194 -29.231  33.883   .00   .00
ATOM     71  CA  LEU    26      12.273 -25.765  38.665   .00  1.00
ATOM     72  CB  LEU    26      11.891 -24.526  39.501   .00  1.00
ATOM     73  CG  LEU    26      13.240 -23.407  40.126   .00   .00
ATOM     74  CA  ILE    27      15.987 -26.059  39.216   .00  1.00
ATOM     75  CB  ILE    27      17.242 -27.125  37.643   .00   .00
ATOM     76  CA  LEU    28      17.992 -23.326  40.913   .00  1.00
ATOM     77  CB  LEU    28      17.285 -22.636  42.105   .00  1.00
ATOM     78  CG  LEU    28      17.924 -20.874  42.454   .00   .00
ATOM     79  CA  ASN    29      21.808 -23.349  41.299   .00  1.00
ATOM     80  CB  ASN    29      22.745 -23.682  40.162   .00  1.00
ATOM     81  CG  ASN    29      22.683 -25.576  39.584   .00   .00
ATOM     82  CA  ARG    30      23.372 -20.869  43.736   .00  1.00
ATOM     83  CB  ARG    30      22.965 -20.613  45.148   .00  1.00
ATOM     84  CG  ARG    30      21.085 -19.076  46.143   .00   .00
ATOM     85  ND  ARG    30      21.278 -19.353  48.380   .00   .00
ATOM     86  CA  ARG    31      27.113 -20.507  43.012   .00  1.00
ATOM     87  CB  ARG    31      27.593 -20.866  41.614   .00  1.00
ATOM     88  CG  ARG    31      27.395 -22.879  39.970   .00   .00
ATOM     89  ND  ARG    31      28.002 -24.113  38.060   .00   .00
ATOM     90  CA  PRO    32      28.915 -17.780  44.864   .00  1.00
ATOM     91  CB  PRO    32      29.345 -18.036  46.211   .00   .00
ATOM     92  CA  PRO    33      31.278 -15.558  42.853   .00  1.00
ATOM     93  CB  PRO    33      31.825 -16.091  41.668   .00   .00
ATOM     94  CA  ALA    34      29.232 -12.465  42.089   .00  1.00
ATOM     95  CB  ALA    34      28.066 -12.411  41.047   .00  1.00
ATOM     96  CA  GLU    35      28.581 -12.048  45.794   .00  1.00
ATOM     97  CB  GLU    35      28.374 -10.300  46.358   .00   .00
ATOM     98  OG  GLU    35      31.228  -9.934  46.599   .00   .00
ATOM     99  CA  GLY    36      25.329 -13.960  45.404   .00  1.00
ATOM    100  CA  TYR    37      24.658 -16.058  42.317   .00  1.00
ATOM    101  CB  TYR    37      25.734 -16.917  41.632   .00  1.00
ATOM    102  CG  TYR    37      25.199 -17.356  39.843   .00   .00
ATOM    103  CD  TYR    37      24.446 -17.846  37.583   .00   .00
ATOM    104  CA  ALA    38      21.128 -17.420  41.857   .00  1.00
ATOM    105  CB  ALA    38      19.999 -16.710  42.509   .00  1.00
ATOM    106  CA  TRP    39      19.785 -19.381  38.915   .00  1.00
ATOM    107  CB  TRP    39      20.639 -20.457  38.265   .00  1.00
ATOM    108  CG  TRP    39      19.521 -21.446  35.919   .00   .00
ATOM    109  CD  TRP    39      20.946 -22.758  35.006   .00   .00
ATOM    110  CA  LEU    40      16.075 -19.867  38.361   .00  1.00
ATOM    111  CB  LEU    40      15.218 -18.580  38.351   .00  1.00
ATOM    112  CG  LEU    40      15.519 -17.574  39.933   .00   .00
ATOM    113  CA  LYS    41      14.795 -22.347  35.780   .00  1.00
ATOM    114  CB  LYS    41      15.743 -23.528  35.522   .00  1.00
ATOM    115  CG  LYS    41      14.872 -25.493  34.109   .00   .00
ATOM    116  ND  LYS    41      15.053 -27.356  32.461   .00   .00
ATOM    117  CA  TYR    42      11.129 -23.155  35.334   .00  1.00
ATOM    118  CB  TYR    42       9.993 -22.184  35.599   .00  1.00
ATOM    119  CG  TYR    42      10.251 -21.114  37.205   .00   .00
ATOM    120  CD  TYR    42      10.586 -19.857  39.250   .00   .00
ATOM    121  CA  GLU    43      10.211 -25.743  32.685   .00  1.00
ATOM    122  CB  GLU    43       9.793 -27.506  33.142   .00   .00
ATOM    123  OG  GLU    43      11.171 -29.541  34.144   .00   .00
ATOM    124  CA  ASP    44       8.102 -24.604  29.668   .00  1.00
ATOM    125  CB  ASP    44       6.801 -23.846  29.910   .00  1.00
ATOM    126  OG  ASP    44       5.786 -24.599  31.333   .00   .00
ATOM    127  CA  ASP    45      10.047 -23.548  26.598   .00  1.00
ATOM    128  CB  ASP    45       9.258 -23.412  25.309   .00  1.00
ATOM    129  OG  ASP    45       9.204 -25.052  24.222   .00   .00
ATOM    130  CA  GLY    46      10.264 -19.971  27.763   .00  1.00
ATOM    131  CA  GLN    47      13.682 -18.510  28.778   .00  1.00
ATOM    132  CB  GLN    47      15.052 -18.654  27.596   .00   .00
ATOM    133  CG  GLN    47      16.206 -20.256  25.887   .00   .00
ATOM    134  CA  GLU    48      13.567 -15.442  31.011   .00  1.00
ATOM    135  CB  GLU    48      12.040 -15.127  31.952   .00   .00
ATOM    136  OG  GLU    48       9.603 -14.070  31.586   .00   .00
ATOM    137  CA  PHE    49      16.339 -13.845  33.049   .00  1.00
ATOM    138  CB  PHE    49      16.365 -14.012  34.557   .00  1.00
ATOM    139  CG  PHE    49      14.679 -13.594  35.438   .00   .00
ATOM    140  CD  PHE    49      13.081 -13.176  36.281   .00   .00
ATOM    141  CA  GLU    50      19.905 -13.170  31.770   .00  1.00
ATOM    142  CB  GLU    50      20.271 -12.179  30.202   .00   .00
ATOM    143  OG  GLU    50      20.145 -12.606  27.299   .00   .00
ATOM    144  CA  ALA    51      20.544 -10.914  34.835   .00  1.00
ATOM    145  CB  ALA    51      19.368 -10.943  35.822   .00  1.00
ATOM    146  CA  ASN    52      23.705  -9.689  36.539   .00  1.00
ATOM    147  CB  ASN    52      24.902  -9.154  35.802   .00  1.00
ATOM    148  CG  ASN    52      26.341  -8.855  37.097   .00   .00
ATOM    149  CA  LEU    53      23.028  -8.061  39.890   .00  1.00
ATOM    150  CB  LEU    53      21.864  -8.652  40.664   .00  1.00
ATOM    151  CG  LEU    53      20.283  -9.186  39.752   .00   .00
ATOM    152  CA  ALA    54      26.030  -8.746  42.120   .00  1.00
ATOM    153  CB  ALA    54      27.073  -7.663  42.138   .00  1.00
ATOM    154  CA  ASP    55      24.275  -9.671  45.371   .00  1.00
ATOM    155  CB  ASP    55      23.440  -8.627  46.195   .00  1.00
ATOM    156  OG  ASP    55      24.530  -7.134  46.817   .00   .00
ATOM    157  CA  VAL    56      21.684 -11.640  43.528   .00  1.00
ATOM    158  CB  VAL    56      19.835 -11.216  43.849   .00   .00
ATOM    159  CA  LYS    57      22.519 -12.682  39.852   .00  1.00
ATOM    160  CB  LYS    57      23.954 -13.101  39.505   .00  1.00
ATOM    161  CG  LYS    57      25.422 -13.452  37.420   .00   .00
ATOM    162  ND  LYS    57      27.703 -13.803  36.171   .00   .00
ATOM    163  CA  LEU    58      19.610 -14.590  38.190   .00  1.00
ATOM    164  CB  LEU    58      18.208 -13.963  38.310   .00  1.00
ATOM    165  CG  LEU    58      17.661 -13.579  40.077   .00   .00
ATOM    166  CA  VAL    59      19.838 -16.680  34.989   .00  1.00
ATOM    167  CB  VAL    59      21.459 -17.612  34.491   .00   .00
ATOM    168  CA  ALA    60      16.715 -18.548  33.915   .00  1.00
ATOM    169  CB  ALA    60      15.297 -18.032  33.954   .00  1.00
ATOM    170  CA  LEU    61      16.467 -21.346  31.352   .00  1.00
ATOM    171  CB  LEU    61      17.694 -22.244  31.176   .00  1.00
ATOM    172  CG  LEU    61      19.391 -21.523  30.778   .00   .00
ATOM    173  CA  ILE    62      13.053 -23.056  30.934   .00  1.00
ATOM    174  CB  ILE    62      11.094 -21.813  31.215   .00   .00
ATOM    175  CA  GLU    63      13.374 -25.947  28.520   .00  1.00
ATOM    176  CB  GLU    63      15.011 -26.325  27.716   .00   .00
ATOM    177  OG  GLU    63      16.736 -25.587  25.776   .00   .00
ATOM    178  CA  GLYC   64      11.580 -29.269  28.850   .00  1.00
TER              GLYC   64
ENDDAT 3.1
END
