
PFRMAT ABF1
TARGET T0008
AUTHOR 7051-9610-4897 Maxim Totrov, Ruben Abagyan
AUTHOR 7051-9610-4897 The Skirball Institute, NYU Medical Center
BEGDAT 3.1  1  1.0
REMARK  This model of csvl was built with the ICM program 
REMARK  by global optimization of side-chains. 
REMARK              Sequence alignment methods
REMARK  PROGRAM ICM 2.5 (Molsoft, LLC, 1994) 
REMARK  SCORING_MATRIX blosum45
REMARK  GAP_PENALTY 2.8 GAP_EXTENSION 0.15
REMARK                  Core choice methods
REMARK  Core regions were built by the ICM regularization procedure
REMARK  [Abagyan,Totrov,Kuznetsov (1994),  J.Comp.Chem. 15, 488-506]
REMARK                 Side chain building methods
REMARK  The Biased Probability Monte Carlo procedure was used to predict
REMARK  side-chains [Abagyan&Totrov, 1994, JMB, 235, 983-1002].
REMARK  Rotamers assigned from a library depending on residue type 
REMARK  Local energy minimization of full-atom models
REMARK  in the internal coordinate space. Both conjugate gradients and
REMARK  a quasi-Newton algorithms are used for minimization.
REMARK  [Abagyan,Totrov,Kuznetsov (1994),  J.Comp.Chem. 15, 488-506]
REMARK              Error assessment method:
REMARK  analysis of energetic strain [unpublished]
REMARK  Cavities are analyzied with ICM molecular surface 
REMARK  [Totrov&Abagyan,(1996),JSB,116,138-143]
ATOM      5  CA  VAL A   1      36.576  17.968  15.777  1.00  1.00
ATOM      6  CB  VAL A   1      37.224  19.014  16.686  1.00  1.00
ATOM      7  CG1 VAL A   1      36.519  20.365  16.557  1.00  1.00
ATOM      8  CG2 VAL A   1      37.241  18.541  18.141  1.00  1.00
ATOM      9  C   VAL A   1      36.370  18.466  14.345  1.00  1.00
ATOM     10  O   VAL A   1      35.251  18.795  13.953  1.00  1.00
ATOM     11  N   GLU A   2      37.467  18.506  13.602  1.00  1.00
ATOM     12  CA  GLU A   2      37.411  18.903  12.206  1.00  1.00
ATOM     13  CB  GLU A   2      38.801  18.864  11.569  1.00  1.00
ATOM     14  CG  GLU A   2      38.787  19.508  10.181  1.00  1.00
ATOM     15  CD  GLU A   2      40.140  19.345   9.487  1.00  1.00
ATOM     16  OE1 GLU A   2      41.108  19.969   9.974  1.00  1.00
ATOM     17  OE2 GLU A   2      40.177  18.599   8.484  1.00  1.00
ATOM     18  C   GLU A   2      36.431  18.013  11.439  1.00  1.00
ATOM     19  O   GLU A   2      35.624  18.506  10.652  1.00  1.00
ATOM     20  N   ALA A   3      36.534  16.717  11.695  1.00  1.00
ATOM     21  CA  ALA A   3      35.715  15.747  10.988  1.00  1.00
ATOM     22  CB  ALA A   3      36.144  14.333  11.383  1.00  1.00
ATOM     23  C   ALA A   3      34.239  16.015  11.291  1.00  1.00
ATOM     24  O   ALA A   3      33.405  16.009  10.387  1.00  1.00
ATOM     25  N   LEU A   4      33.962  16.243  12.566  1.00  1.00
ATOM     26  CA  LEU A   4      32.596  16.476  13.005  1.00  1.00
ATOM     27  CB  LEU A   4      32.527  16.537  14.532  1.00  1.00
ATOM     28  CG  LEU A   4      32.633  15.197  15.263  1.00  1.00
ATOM     29  CD1 LEU A   4      33.110  15.394  16.703  1.00  1.00
ATOM     30  CD2 LEU A   4      31.310  14.431  15.197  1.00  1.00
ATOM     31  C   LEU A   4      32.049  17.726  12.314  1.00  1.00
ATOM     32  O   LEU A   4      30.939  17.711  11.784  1.00  1.00
ATOM     33  N   GLU A   5      32.853  18.779  12.342  1.00  1.00
ATOM     34  CA  GLU A   5      32.451  20.044  11.751  1.00  1.00
ATOM     35  CB  GLU A   5      33.529  21.110  11.951  1.00  1.00
ATOM     36  CG  GLU A   5      33.536  21.620  13.393  1.00  1.00
ATOM     37  CD  GLU A   5      34.642  22.656  13.603  1.00  1.00
ATOM     38  OE1 GLU A   5      34.284  23.838  13.797  1.00  1.00
ATOM     39  OE2 GLU A   5      35.821  22.242  13.566  1.00  1.00
ATOM     40  C   GLU A   5      32.131  19.858  10.266  1.00  1.00
ATOM     41  O   GLU A   5      31.106  20.336   9.784  1.00  1.00
ATOM     42  N   LYS A   6      33.029  19.163   9.583  1.00  1.00
ATOM     43  CA  LYS A   6      32.875  18.940   8.156  1.00  1.00
ATOM     44  CB  LYS A   6      34.131  18.284   7.577  1.00  1.00
ATOM     45  CG  LYS A   6      35.255  19.308   7.408  1.00  1.00
ATOM     46  CD  LYS A   6      36.539  18.636   6.916  1.00  1.00
ATOM     47  CE  LYS A   6      37.604  19.677   6.569  1.00  1.00
ATOM     48  NZ  LYS A   6      38.889  19.017   6.248  1.00  1.00
ATOM     49  C   LYS A   6      31.593  18.143   7.904  1.00  1.00
ATOM     50  O   LYS A   6      30.845  18.441   6.975  1.00  1.00
ATOM     51  N   LYS A   7      31.380  17.144   8.748  1.00  1.00
ATOM     52  CA  LYS A   7      30.220  16.281   8.608  1.00  1.00
ATOM     53  CB  LYS A   7      30.296  15.117   9.598  1.00  1.00
ATOM     54  CG  LYS A   7      29.213  14.076   9.305  1.00  1.00
ATOM     55  CD  LYS A   7      29.035  13.122  10.488  1.00  1.00
ATOM     56  CE  LYS A   7      30.270  12.238  10.670  1.00  1.00
ATOM     57  NZ  LYS A   7      30.019  11.203  11.699  1.00  1.00
ATOM     58  C   LYS A   7      28.947  17.119   8.741  1.00  1.00
ATOM     59  O   LYS A   7      28.056  17.038   7.897  1.00  1.00
ATOM     60  N   VAL A   8      28.902  17.905   9.807  1.00  1.00
ATOM     61  CA  VAL A   8      27.723  18.702  10.100  1.00  1.00
ATOM     62  CB  VAL A   8      27.900  19.425  11.436  1.00  1.00
ATOM     63  CG1 VAL A   8      26.889  20.565  11.581  1.00  1.00
ATOM     64  CG2 VAL A   8      27.794  18.446  12.607  1.00  1.00
ATOM     65  C   VAL A   8      27.457  19.657   8.934  1.00  1.00
ATOM     66  O   VAL A   8      26.317  19.805   8.497  1.00  1.00
ATOM     67  N   ALA A   9      28.528  20.280   8.464  1.00  1.00
ATOM     68  CA  ALA A   9      28.418  21.247   7.385  1.00  1.00
ATOM     69  CB  ALA A   9      29.780  21.901   7.145  1.00  1.00
ATOM     70  C   ALA A   9      27.877  20.550   6.135  1.00  1.00
ATOM     71  O   ALA A   9      26.992  21.076   5.461  1.00  1.00
ATOM     72  N   ALA A  10      28.431  19.378   5.863  1.00  1.00
ATOM     73  CA  ALA A  10      28.080  18.646   4.657  1.00  1.00
ATOM     74  CB  ALA A  10      28.948  17.390   4.552  1.00  1.00
ATOM     75  C   ALA A  10      26.585  18.322   4.680  1.00  1.00
ATOM     76  O   ALA A  10      25.888  18.523   3.686  1.00  1.00
ATOM     77  N   LEU A  11      26.137  17.827   5.824  1.00  1.00
ATOM     78  CA  LEU A  11      24.744  17.441   5.978  1.00  1.00
ATOM     79  CB  LEU A  11      24.547  16.649   7.272  1.00  1.00
ATOM     80  CG  LEU A  11      25.284  15.311   7.357  1.00  1.00
ATOM     81  CD1 LEU A  11      25.326  14.800   8.799  1.00  1.00
ATOM     82  CD2 LEU A  11      24.670  14.285   6.403  1.00  1.00
ATOM     83  C   LEU A  11      23.861  18.687   5.878  1.00  1.00
ATOM     84  O   LEU A  11      22.823  18.665   5.218  1.00  1.00
ATOM     85  N   GLU A  12      24.304  19.742   6.545  1.00  1.00
ATOM     86  CA  GLU A  12      23.521  20.964   6.619  1.00  1.00
ATOM     87  CB  GLU A  12      24.214  22.008   7.497  1.00  1.00
ATOM     88  CG  GLU A  12      23.330  23.242   7.683  1.00  1.00
ATOM     89  CD  GLU A  12      24.000  24.262   8.605  1.00  1.00
ATOM     90  OE1 GLU A  12      24.382  25.333   8.085  1.00  1.00
ATOM     91  OE2 GLU A  12      24.117  23.949   9.810  1.00  1.00
ATOM     92  C   GLU A  12      23.259  21.513   5.216  1.00  1.00
ATOM     93  O   GLU A  12      22.136  21.899   4.895  1.00  1.00
ATOM     94  N   SER A  13      24.316  21.532   4.416  1.00  1.00
ATOM     95  CA  SER A  13      24.218  22.043   3.059  1.00  1.00
ATOM     96  CB  SER A  13      25.576  22.001   2.356  1.00  1.00
ATOM     97  OG  SER A  13      25.939  20.676   1.974  1.00  1.00
ATOM     98  C   SER A  13      23.186  21.236   2.269  1.00  1.00
ATOM     99  O   SER A  13      22.384  21.804   1.529  1.00  1.00
ATOM    100  N   LYS A  14      23.240  19.925   2.453  1.00  1.00
ATOM    101  CA  LYS A  14      22.299  19.037   1.790  1.00  1.00
ATOM    102  CB  LYS A  14      22.645  17.576   2.082  1.00  1.00
ATOM    103  CG  LYS A  14      23.677  17.046   1.084  1.00  1.00
ATOM    104  CD  LYS A  14      23.975  15.567   1.337  1.00  1.00
ATOM    105  CE  LYS A  14      24.748  14.956   0.166  1.00  1.00
ATOM    106  NZ  LYS A  14      23.823  14.577  -0.924  1.00  1.00
ATOM    107  C   LYS A  14      20.873  19.423   2.188  1.00  1.00
ATOM    108  O   LYS A  14      20.017  19.622   1.327  1.00  1.00
ATOM    109  N   VAL A  15      20.662  19.518   3.492  1.00  1.00
ATOM    110  CA  VAL A  15      19.342  19.826   4.016  1.00  1.00
ATOM    111  CB  VAL A  15      19.397  19.933   5.542  1.00  1.00
ATOM    112  CG1 VAL A  15      18.135  20.603   6.090  1.00  1.00
ATOM    113  CG2 VAL A  15      19.609  18.559   6.180  1.00  1.00
ATOM    114  C   VAL A  15      18.817  21.097   3.347  1.00  1.00
ATOM    115  O   VAL A  15      17.732  21.095   2.767  1.00  1.00
ATOM    116  N   GLN A  16      19.611  22.153   3.448  1.00  1.00
ATOM    117  CA  GLN A  16      19.190  23.456   2.961  1.00  1.00
ATOM    118  CB  GLN A  16      20.281  24.504   3.187  1.00  1.00
ATOM    119  CG  GLN A  16      20.389  24.874   4.667  1.00  1.00
ATOM    120  CD  GLN A  16      21.561  25.827   4.910  1.00  1.00
ATOM    121  OE1 GLN A  16      22.191  26.324   3.992  1.00  1.00
ATOM    122  NE2 GLN A  16      21.817  26.053   6.196  1.00  1.00
ATOM    123  C   GLN A  16      18.807  23.372   1.482  1.00  1.00
ATOM    124  O   GLN A  16      17.772  23.896   1.074  1.00  1.00
ATOM    125  N   ALA A  17      19.664  22.708   0.719  1.00  1.00
ATOM    126  CA  ALA A  17      19.489  22.645  -0.722  1.00  1.00
ATOM    127  CB  ALA A  17      20.731  22.020  -1.360  1.00  1.00
ATOM    128  C   ALA A  17      18.213  21.864  -1.043  1.00  1.00
ATOM    129  O   ALA A  17      17.382  22.321  -1.827  1.00  1.00
ATOM    130  N   LEU A  18      18.097  20.700  -0.421  1.00  1.00
ATOM    131  CA  LEU A  18      17.133  19.707  -0.865  1.00  1.00
ATOM    132  CB  LEU A  18      17.520  18.318  -0.352  1.00  1.00
ATOM    133  CG  LEU A  18      18.839  17.751  -0.883  1.00  1.00
ATOM    134  CD1 LEU A  18      19.356  16.630   0.020  1.00  1.00
ATOM    135  CD2 LEU A  18      18.694  17.296  -2.337  1.00  1.00
ATOM    136  C   LEU A  18      15.728  20.146  -0.449  1.00  1.00
ATOM    137  O   LEU A  18      14.761  19.910  -1.173  1.00  1.00
ATOM    138  N   GLU A  19      15.658  20.776   0.714  1.00  1.00
ATOM    139  CA  GLU A  19      14.385  21.236   1.241  1.00  1.00
ATOM    140  CB  GLU A  19      14.585  22.068   2.509  1.00  1.00
ATOM    141  CG  GLU A  19      14.700  21.170   3.743  1.00  1.00
ATOM    142  CD  GLU A  19      14.937  22.001   5.006  1.00  1.00
ATOM    143  OE1 GLU A  19      15.805  22.898   4.940  1.00  1.00
ATOM    144  OE2 GLU A  19      14.244  21.720   6.007  1.00  1.00
ATOM    145  C   GLU A  19      13.625  22.031   0.177  1.00  1.00
ATOM    146  O   GLU A  19      12.418  21.860   0.013  1.00  1.00
ATOM    147  N   LYS A  20      14.364  22.884  -0.518  1.00  1.00
ATOM    148  CA  LYS A  20      13.764  23.751  -1.517  1.00  1.00
ATOM    149  CB  LYS A  20      14.785  24.771  -2.024  1.00  1.00
ATOM    150  CG  LYS A  20      15.154  25.771  -0.925  1.00  1.00
ATOM    151  CD  LYS A  20      16.115  26.837  -1.453  1.00  1.00
ATOM    152  CE  LYS A  20      17.557  26.324  -1.450  1.00  1.00
ATOM    153  NZ  LYS A  20      18.128  26.391  -0.087  1.00  1.00
ATOM    154  C   LYS A  20      13.147  22.896  -2.625  1.00  1.00
ATOM    155  O   LYS A  20      12.023  23.147  -3.056  1.00  1.00
ATOM    156  N   LYS A  21      13.911  21.902  -3.056  1.00  1.00
ATOM    157  CA  LYS A  21      13.479  21.045  -4.147  1.00  1.00
ATOM    158  CB  LYS A  21      14.628  20.147  -4.610  1.00  1.00
ATOM    159  CG  LYS A  21      15.721  20.967  -5.299  1.00  1.00
ATOM    160  CD  LYS A  21      16.907  20.082  -5.689  1.00  1.00
ATOM    161  CE  LYS A  21      16.536  19.142  -6.837  1.00  1.00
ATOM    162  NZ  LYS A  21      16.436  17.747  -6.354  1.00  1.00
ATOM    163  C   LYS A  21      12.229  20.273  -3.720  1.00  1.00
ATOM    164  O   LYS A  21      11.244  20.224  -4.454  1.00  1.00
ATOM    165  N   VAL A  22      12.310  19.689  -2.533  1.00  1.00
ATOM    166  CA  VAL A  22      11.238  18.841  -2.041  1.00  1.00
ATOM    167  CB  VAL A  22      11.658  18.173  -0.731  1.00  1.00
ATOM    168  CG1 VAL A  22      10.451  17.567  -0.012  1.00  1.00
ATOM    169  CG2 VAL A  22      12.738  17.116  -0.975  1.00  1.00
ATOM    170  C   VAL A  22       9.959  19.670  -1.907  1.00  1.00
ATOM    171  O   VAL A  22       8.874  19.203  -2.251  1.00  1.00
ATOM    172  N   GLU A  23      10.129  20.884  -1.405  1.00  1.00
ATOM    173  CA  GLU A  23       9.009  21.799  -1.265  1.00  1.00
ATOM    174  CB  GLU A  23       9.453  23.116  -0.625  1.00  1.00
ATOM    175  CG  GLU A  23       8.255  24.030  -0.362  1.00  1.00
ATOM    176  CD  GLU A  23       8.683  25.295   0.383  1.00  1.00
ATOM    177  OE1 GLU A  23       8.616  25.268   1.631  1.00  1.00
ATOM    178  OE2 GLU A  23       9.068  26.260  -0.311  1.00  1.00
ATOM    179  C   GLU A  23       8.351  22.045  -2.625  1.00  1.00
ATOM    180  O   GLU A  23       7.131  21.954  -2.754  1.00  1.00
ATOM    181  N   ALA A  24       9.189  22.353  -3.604  1.00  1.00
ATOM    182  CA  ALA A  24       8.698  22.709  -4.924  1.00  1.00
ATOM    183  CB  ALA A  24       9.866  23.176  -5.795  1.00  1.00
ATOM    184  C   ALA A  24       7.961  21.512  -5.529  1.00  1.00
ATOM    185  O   ALA A  24       6.880  21.666  -6.095  1.00  1.00
ATOM    186  N   LEU A  25       8.576  20.347  -5.389  1.00  1.00
ATOM    187  CA  LEU A  25       8.042  19.141  -5.999  1.00  1.00
ATOM    188  CB  LEU A  25       9.072  18.011  -5.942  1.00  1.00
ATOM    189  CG  LEU A  25      10.326  18.203  -6.796  1.00  1.00
ATOM    190  CD1 LEU A  25      11.506  17.416  -6.222  1.00  1.00
ATOM    191  CD2 LEU A  25      10.055  17.843  -8.258  1.00  1.00
ATOM    192  C   LEU A  25       6.706  18.790  -5.339  1.00  1.00
ATOM    193  O   LEU A  25       5.720  18.529  -6.027  1.00  1.00
ATOM    194  N   GLU A  26       6.718  18.795  -4.014  1.00  1.00
ATOM    195  CA  GLU A  26       5.562  18.351  -3.254  1.00  1.00
ATOM    196  CB  GLU A  26       5.892  18.248  -1.764  1.00  1.00
ATOM    197  CG  GLU A  26       4.746  17.591  -0.992  1.00  1.00
ATOM    198  CD  GLU A  26       5.125  17.374   0.474  1.00  1.00
ATOM    199  OE1 GLU A  26       4.643  18.171   1.308  1.00  1.00
ATOM    200  OE2 GLU A  26       5.888  16.418   0.727  1.00  1.00
ATOM    201  C   GLU A  26       4.378  19.291  -3.490  1.00  1.00
ATOM    202  O   GLU A  26       3.262  18.839  -3.739  1.00  1.00
ATOM    203  N   HIS A  27       4.663  20.582  -3.403  1.00  1.00
ATOM    204  CA  HIS A  27       3.640  21.591  -3.623  1.00  1.00
ATOM    205  CB  HIS A  27       4.170  22.985  -3.285  1.00  1.00
ATOM    206  CG  HIS A  27       3.169  24.094  -3.507  1.00  1.00
ATOM    207  ND1 HIS A  27       3.037  24.753  -4.717  1.00  1.00
ATOM    208  CE1 HIS A  27       2.082  25.664  -4.595  1.00  1.00
ATOM    209  NE2 HIS A  27       1.598  25.599  -3.321  1.00  1.00
ATOM    210  CD2 HIS A  27       2.253  24.650  -2.663  1.00  1.00
ATOM    211  C   HIS A  27       3.116  21.487  -5.057  1.00  1.00
ATOM    212  O   HIS A  27       1.916  21.329  -5.274  1.00  1.00
ATOM    213  N   GLY A  28       4.043  21.579  -5.999  1.00  1.00
ATOM    214  CA  GLY A  28       3.689  21.505  -7.407  1.00  1.00
ATOM    215  C   GLY A  28       3.600  20.045  -7.856  1.00  1.00
ATOM    216  O   GLY A  28       4.486  19.557  -8.556  1.00  1.00
ATOM    217  NT  GLY A  28       2.526  19.397  -7.427  1.00  1.00
ENDDAT
END
END

