

PFRMAT ABF1
TARGET T0042
AUTHOR 4926-8342-4702 D.J. Osguthorpe, University of Bath, djosg@mgu.bath.ac.uk
REMARK     t0042; NK-lysin from pig, 78a.a.
REMARK Ab initio folding using simplified geometry model with specifically
REMARK parameterised flexible internals and other potentials.
REMARK Molecular dynamics with cooling used as search technique.
REMARK Methods currently working to around 100 atoms
REMARK Method development specifically excluded small proteins with
REMARK disulphide bridges because of foldability problems of such proteins.
REMARK Disulphide bridges have been included between 4-76, 7-70, 35-45,
REMARK - the protein may unfold in reduced form similar to PTI.
REMARK All model atoms have been submitted - however only CA atoms and
REMARK some CB atoms and SG atoms will correspond directly to standard
REMARK PDB atoms - rest of atoms correspond to centres of coordinates of
REMARK groups of PDB atoms e.g. OG corresponds to centre of CG, OD1, OD2
REMARK for ASP.
REMARK Atoms corresponding directly to PDB atoms are labelled 1.0 in
REMARK occupancy field, 0.0 for those not corresponding directly to PDB atoms
REMARK Expected CA RMS from correct fold is 4-6 angstroms
REMARK (i.e. simulations of known structures fluctuate at this level from
REMARK       the X-ray structure)
REMARK I have observed mis-folds with similar CA RMS values - RMS does not
REMARK discriminate between folds at this level - need to use your eyes!!
BEGDAT 3.1    1 1.00
REMARK   check of folding parameters                                        49.9
REMARK  DATE:                                                                   
ATOM      1  CA  GLYN    1      30.722 -14.530  39.200  1.00  0.00  
ATOM      2  CA  TYR     2      29.920 -15.479  42.793  1.00  0.00  
ATOM      3  CB  TYR     2      28.931 -14.611  43.585  1.00  0.00  
ATOM      4  CG  TYR     2      29.299 -12.692  43.267  0.00  0.00  
ATOM      5  CD  TYR     2      29.813 -10.350  42.900  0.00  0.00  
ATOM      6  CA  PHE     3      29.602 -18.972  44.292  1.00  0.00  
ATOM      7  CB  PHE     3      30.791 -19.570  45.064  1.00  0.00  
ATOM      8  CG  PHE     3      32.481 -19.423  44.038  0.00  0.00  
ATOM      9  CD  PHE     3      34.148 -19.194  43.068  0.00  0.00  
ATOM     10  CA  CYS     4      26.432 -20.606  45.715  1.00  0.00  
ATOM     11  CB  CYS     4      25.040 -20.018  45.351  0.00  0.00  
ATOM     12  SG  CYS     4      24.938 -18.218  45.603  1.00  0.00  
ATOM     13  CA  GLU     5      26.109 -24.277  46.837  1.00  0.00  
ATOM     14  CB  GLU     5      27.698 -25.056  47.204  0.00  0.00  
ATOM     15  OG  GLU     5      29.803 -25.613  45.864  0.00  0.00  
ATOM     16  CA  SER     6      23.422 -25.655  49.206  1.00  0.00  
ATOM     17  CB  SER     6      22.026 -24.791  49.938  0.00  0.00  
ATOM     18  CA  CYS     7      22.673 -29.371  49.226  1.00  0.00  
ATOM     19  CB  CYS     7      23.782 -30.291  48.585  0.00  0.00  
ATOM     20  SG  CYS     7      23.120 -31.938  48.064  1.00  0.00  
ATOM     21  CA  ARG     8      20.361 -31.624  51.158  1.00  0.00  
ATOM     22  CB  ARG     8      19.581 -31.124  52.343  1.00  0.00  
ATOM     23  CG  ARG     8      19.889 -30.204  54.680  0.00  0.00  
ATOM     24  ND  ARG     8      20.444 -31.565  56.497  0.00  0.00  
ATOM     25  CA  LYS     9      18.298 -34.264  49.324  1.00  0.00  
ATOM     26  CB  LYS     9      18.813 -34.919  48.042  1.00  0.00  
ATOM     27  CG  LYS     9      17.724 -36.071  45.931  0.00  0.00  
ATOM     28  ND  LYS     9      18.906 -37.592  44.110  0.00  0.00  
ATOM     29  CA  ILE    10      16.024 -36.623  51.225  1.00  0.00  
ATOM     30  CB  ILE    10      16.869 -37.592  53.189  0.00  0.00  
ATOM     31  CA  ILE    11      12.253 -36.561  51.454  1.00  0.00  
ATOM     32  CB  ILE    11      10.960 -37.251  49.741  0.00  0.00  
ATOM     33  CA  GLN    12      12.077 -39.189  54.159  1.00  0.00  
ATOM     34  CB  GLN    12      13.015 -40.765  54.008  0.00  0.00  
ATOM     35  CG  GLN    12      11.562 -41.522  51.931  0.00  0.00  
ATOM     36  CA  LYS    13      13.330 -36.486  56.464  1.00  0.00  
ATOM     37  CB  LYS    13      14.647 -36.567  57.144  1.00  0.00  
ATOM     38  CG  LYS    13      15.540 -38.614  58.557  0.00  0.00  
ATOM     39  ND  LYS    13      17.335 -39.374  59.933  0.00  0.00  
ATOM     40  CA  LEU    14      12.840 -32.873  55.537  1.00  0.00  
ATOM     41  CB  LEU    14      13.279 -32.325  54.124  1.00  0.00  
ATOM     42  CG  LEU    14      15.106 -32.410  53.650  0.00  0.00  
ATOM     43  CA  GLU    15       9.113 -33.328  55.987  1.00  0.00  
ATOM     44  CB  GLU    15       8.451 -34.975  55.650  0.00  0.00  
ATOM     45  OG  GLU    15       7.556 -36.124  53.246  0.00  0.00  
ATOM     46  CA  ASP    16       9.566 -33.119  59.799  1.00  0.00  
ATOM     47  CB  ASP    16      10.414 -34.309  60.364  1.00  0.00  
ATOM     48  OG  ASP    16      10.443 -34.387  62.288  0.00  0.00  
ATOM     49  CA  MET    17      11.774 -30.043  59.493  1.00  0.00  
ATOM     50  CB  MET    17      13.049 -30.277  58.677  1.00  0.00  
ATOM     52  CA  VAL    18       9.029 -28.275  57.466  1.00  0.00  
ATOM     53  CB  VAL    18       7.786 -27.156  58.381  0.00  0.00  
ATOM     54  CA  GLY    19       9.535 -27.004  53.899  1.00  0.00  
ATOM     55  CA  PRO    20       9.569 -23.277  54.523  1.00  0.00  
ATOM     56  CB  PRO    20       8.427 -22.731  55.084  0.00  0.00  
ATOM     57  CA  GLN    21      11.971 -23.699  57.410  1.00  0.00  
ATOM     58  CB  GLN    21      11.425 -24.427  59.044  0.00  0.00  
ATOM     59  CG  GLN    21      10.064 -23.937  61.244  0.00  0.00  
ATOM     60  CA  PRO    22      14.480 -25.687  55.408  1.00  0.00  
ATOM     61  CB  PRO    22      14.151 -27.050  55.051  0.00  0.00  
ATOM     62  CA  ASN    23      14.327 -23.274  52.494  1.00  0.00  
ATOM     63  CB  ASN    23      12.957 -23.282  51.802  1.00  0.00  
ATOM     64  CG  ASN    23      12.663 -24.878  50.704  0.00  0.00  
ATOM     65  CA  GLU    24      15.132 -20.214  54.600  1.00  0.00  
ATOM     66  CB  GLU    24      13.699 -19.426  55.549  0.00  0.00  
ATOM     67  OG  GLU    24      11.462 -17.828  55.186  0.00  0.00  
ATOM     68  CA  ASP    25      17.896 -21.854  56.599  1.00  0.00  
ATOM     69  CB  ASP    25      17.432 -23.074  57.444  1.00  0.00  
ATOM     70  OG  ASP    25      16.055 -22.635  58.775  0.00  0.00  
ATOM     71  CA  THR    26      19.757 -23.303  53.626  1.00  0.00  
ATOM     72  CB  THR    26      18.957 -24.813  52.664  0.00  0.00  
ATOM     73  CA  VAL    27      19.624 -20.102  51.596  1.00  0.00  
ATOM     74  CB  VAL    27      18.011 -19.163  51.189  0.00  0.00  
ATOM     75  CA  THR    28      20.901 -18.026  54.562  1.00  0.00  
ATOM     76  CB  THR    28      19.697 -17.754  56.074  0.00  0.00  
ATOM     77  CA  GLN    29      23.843 -20.289  55.020  1.00  0.00  
ATOM     78  CB  GLN    29      23.595 -22.100  55.329  0.00  0.00  
ATOM     79  CG  GLN    29      23.103 -22.105  57.970  0.00  0.00  
ATOM     80  CA  ALA    30      24.777 -20.090  51.345  1.00  0.00  
ATOM     81  CB  ALA    30      23.945 -20.575  50.139  1.00  0.00  
ATOM     82  CA  ALA    31      24.833 -16.309  51.257  1.00  0.00  
ATOM     83  CB  ALA    31      23.675 -15.320  51.417  1.00  0.00  
ATOM     84  CA  SER    32      27.181 -16.044  54.258  1.00  0.00  
ATOM     85  CB  SER    32      26.472 -16.685  55.796  0.00  0.00  
ATOM     86  CA  GLN    33      29.662 -18.379  52.575  1.00  0.00  
ATOM     87  CB  GLN    33      29.199 -20.236  52.669  0.00  0.00  
ATOM     88  CG  GLN    33      30.360 -20.711  55.186  0.00  0.00  
ATOM     89  CA  VAL    34      29.828 -16.560  49.279  1.00  0.00  
ATOM     90  CB  VAL    34      28.357 -16.648  48.055  0.00  0.00  
ATOM     91  CA  CYS    35      30.393 -13.140  50.803  1.00  0.00  
ATOM     92  CB  CYS    35      29.268 -12.365  51.447  0.00  0.00  
ATOM     93  SG  CYS    35      27.790 -12.219  50.421  1.00  0.00  
ATOM     94  CA  ASP    36      33.143 -14.388  53.082  1.00  0.00  
ATOM     95  CB  ASP    36      33.037 -15.409  54.198  1.00  0.00  
ATOM     96  OG  ASP    36      31.907 -14.806  55.681  0.00  0.00  
ATOM     97  CA  LYS    37      34.948 -15.940  50.070  1.00  0.00  
ATOM     98  CB  LYS    37      34.219 -16.967  49.155  1.00  0.00  
ATOM     99  CG  LYS    37      34.027 -19.582  48.997  0.00  0.00  
ATOM    100  ND  LYS    37      34.364 -21.676  47.799  0.00  0.00  
ATOM    101  CA  LEU    38      34.842 -12.679  48.176  1.00  0.00  
ATOM    102  CB  LEU    38      33.452 -12.173  47.643  1.00  0.00  
ATOM    103  CG  LEU    38      32.684 -13.116  46.270  0.00  0.00  
ATOM    104  CA  LYS    39      36.007 -10.487  51.067  1.00  0.00  
ATOM    105  CB  LYS    39      37.245 -10.945  51.835  1.00  0.00  
ATOM    106  CG  LYS    39      37.390 -12.450  53.900  0.00  0.00  
ATOM    107  ND  LYS    39      38.457 -13.562  55.843  0.00  0.00  
ATOM    108  CA  ILE    40      36.794  -7.708  48.634  1.00  0.00  
ATOM    109  CB  ILE    40      38.037  -8.114  46.859  0.00  0.00  
ATOM    110  CA  LEU    41      33.235  -7.535  47.447  1.00  0.00  
ATOM    111  CB  LEU    41      32.636  -8.339  46.318  1.00  0.00  
ATOM    112  CG  LEU    41      33.396  -8.157  44.591  0.00  0.00  
ATOM    113  CA  ARG    42      31.407  -8.053  50.729  1.00  0.00  
ATOM    114  CB  ARG    42      32.114  -7.778  52.072  1.00  0.00  
ATOM    115  CG  ARG    42      32.432  -8.906  54.393  0.00  0.00  
ATOM    116  ND  ARG    42      33.512  -9.985  56.188  0.00  0.00  
ATOM    117  CA  GLY    43      29.057  -5.204  50.186  1.00  0.00  
ATOM    118  CA  LEU    44      28.165  -5.882  46.556  1.00  0.00  
ATOM    119  CB  LEU    44      29.205  -5.672  45.475  1.00  0.00  
ATOM    120  CG  LEU    44      28.669  -6.017  43.739  0.00  0.00  
ATOM    121  CA  CYS    45      27.716  -9.565  47.188  1.00  0.00  
ATOM    122  CB  CYS    45      28.907 -10.195  47.852  0.00  0.00  
ATOM    123  SG  CYS    45      28.843 -11.991  48.131  1.00  0.00  
ATOM    124  CA  LYS    46      25.052  -8.872  49.785  1.00  0.00  
ATOM    125  CB  LYS    46      25.289  -7.830  50.921  1.00  0.00  
ATOM    126  CG  LYS    46      26.589  -7.645  53.143  0.00  0.00  
ATOM    127  ND  LYS    46      27.549  -6.567  55.146  0.00  0.00  
ATOM    128  CA  LYS    47      22.751  -7.268  47.162  1.00  0.00  
ATOM    129  CB  LYS    47      23.211  -5.825  46.957  1.00  0.00  
ATOM    130  CG  LYS    47      22.879  -4.115  48.841  0.00  0.00  
ATOM    131  ND  LYS    47      21.550  -2.517  50.196  0.00  0.00  
ATOM    132  CA  ILE    48      23.491  -9.795  44.404  1.00  0.00  
ATOM    133  CB  ILE    48      25.469 -10.041  43.407  0.00  0.00  
ATOM    134  CA  MET    49      22.922 -12.790  46.703  1.00  0.00  
ATOM    135  CB  MET    49      23.996 -12.765  47.782  1.00  0.00  
ATOM    137  CA  ARG    50      19.606 -11.643  48.043  1.00  0.00  
ATOM    138  CB  ARG    50      19.512 -10.469  48.972  1.00  0.00  
ATOM    139  CG  ARG    50      20.543 -10.143  51.343  0.00  0.00  
ATOM    140  ND  ARG    50      20.518 -10.110  53.745  0.00  0.00  
ATOM    141  CA  SER    51      17.862 -11.179  44.658  1.00  0.00  
ATOM    142  CB  SER    51      18.497  -9.804  43.622  0.00  0.00  
ATOM    143  CA  PHE    52      19.169 -14.492  43.194  1.00  0.00  
ATOM    144  CB  PHE    52      20.599 -14.757  42.800  1.00  0.00  
ATOM    145  CG  PHE    52      20.932 -16.622  42.143  0.00  0.00  
ATOM    146  CD  PHE    52      21.172 -18.337  41.448  0.00  0.00  
ATOM    147  CA  LEU    53      18.526 -16.518  46.368  1.00  0.00  
ATOM    148  CB  LEU    53      19.243 -16.237  47.727  1.00  0.00  
ATOM    149  CG  LEU    53      21.077 -16.651  47.751  0.00  0.00  
ATOM    150  CA  ARG    54      14.890 -15.416  46.666  1.00  0.00  
ATOM    151  CB  ARG    54      14.562 -13.879  46.677  1.00  0.00  
ATOM    152  CG  ARG    54      12.536 -12.279  47.220  0.00  0.00  
ATOM    153  ND  ARG    54      11.522 -10.701  48.544  0.00  0.00  
ATOM    154  CA  ARG    55      14.081 -16.320  43.080  1.00  0.00  
ATOM    155  CB  ARG    55      14.759 -15.545  41.945  1.00  0.00  
ATOM    156  CG  ARG    55      14.111 -13.373  40.746  0.00  0.00  
ATOM    157  ND  ARG    55      13.177 -12.040  38.938  0.00  0.00  
ATOM    158  CA  ILE    56      15.596 -19.814  43.316  1.00  0.00  
ATOM    159  CB  ILE    56      17.904 -19.965  43.850  0.00  0.00  
ATOM    160  CA  SER    57      13.407 -20.418  46.351  1.00  0.00  
ATOM    161  CB  SER    57      13.629 -19.477  47.916  0.00  0.00  
ATOM    162  CA  TRP    58      10.284 -19.312  44.487  1.00  0.00  
ATOM    163  CB  TRP    58      10.198 -17.747  44.437  1.00  0.00  
ATOM    164  CG  TRP    58      10.634 -16.601  46.880  0.00  0.00  
ATOM    165  CD  TRP    58       8.334 -16.383  48.128  0.00  0.00  
ATOM    166  CA  ASP    59      10.975 -21.574  41.564  1.00  0.00  
ATOM    167  CB  ASP    59      12.218 -21.472  40.711  1.00  0.00  
ATOM    168  OG  ASP    59      12.277 -19.987  39.415  0.00  0.00  
ATOM    169  CA  ILE    60      11.604 -24.646  43.709  1.00  0.00  
ATOM    170  CB  ILE    60      13.487 -24.640  45.085  0.00  0.00  
ATOM    171  CA  LEU    61       8.377 -24.108  45.566  1.00  0.00  
ATOM    172  CB  LEU    61       8.208 -22.716  46.178  1.00  0.00  
ATOM    173  CG  LEU    61       9.262 -22.312  47.724  0.00  0.00  
ATOM    174  CA  THR    62       6.310 -24.016  42.414  1.00  0.00  
ATOM    175  CB  THR    62       6.826 -22.791  40.966  0.00  0.00  
ATOM    176  CA  GLY    63       7.340 -27.585  41.492  1.00  0.00  
ATOM    177  CA  LYS    64       6.958 -29.121  44.955  1.00  0.00  
ATOM    178  CB  LYS    64       6.205 -30.417  45.145  1.00  0.00  
ATOM    179  CG  LYS    64       3.824 -31.471  44.895  0.00  0.00  
ATOM    180  ND  LYS    64       1.403 -31.497  45.432  0.00  0.00  
ATOM    181  CA  LYS    65      10.714 -29.714  45.202  1.00  0.00  
ATOM    182  CB  LYS    65      11.755 -29.003  44.329  1.00  0.00  
ATOM    183  CG  LYS    65      11.957 -29.839  41.883  0.00  0.00  
ATOM    184  ND  LYS    65      13.169 -29.709  39.727  0.00  0.00  
ATOM    185  CA  PRO    66      10.619 -28.789  48.897  1.00  0.00  
ATOM    186  CB  PRO    66       9.462 -28.128  49.321  0.00  0.00  
ATOM    187  CA  GLN    67      10.377 -32.403  49.989  1.00  0.00  
ATOM    188  CB  GLN    67       9.079 -33.474  49.256  0.00  0.00  
ATOM    189  CG  GLN    67       6.540 -33.898  49.357  0.00  0.00  
ATOM    190  CA  ALA    68      13.811 -32.848  48.445  1.00  0.00  
ATOM    191  CB  ALA    68      14.075 -33.550  47.115  1.00  0.00  
ATOM    192  CA  ILE    69      16.175 -29.863  48.284  1.00  0.00  
ATOM    193  CB  ILE    69      16.298 -28.211  49.932  0.00  0.00  
ATOM    194  CA  CYS    70      19.508 -29.885  46.399  1.00  0.00  
ATOM    195  CB  CYS    70      19.880 -31.090  45.548  0.00  0.00  
ATOM    196  SG  CYS    70      21.661 -31.258  45.114  1.00  0.00  
ATOM    197  CA  VAL    71      21.200 -26.840  44.786  1.00  0.00  
ATOM    198  CB  VAL    71      20.821 -25.100  45.501  0.00  0.00  
ATOM    199  CA  ASP    72      24.671 -26.514  43.218  1.00  0.00  
ATOM    200  CB  ASP    72      25.373 -27.792  42.776  1.00  0.00  
ATOM    201  OG  ASP    72      25.562 -29.123  44.239  0.00  0.00  
ATOM    202  CA  ILE    73      25.534 -23.313  41.221  1.00  0.00  
ATOM    203  CB  ILE    73      23.927 -21.594  41.093  0.00  0.00  
ATOM    204  CA  LYS    74      29.205 -22.231  40.982  1.00  0.00  
ATOM    205  CB  LYS    74      30.265 -23.280  40.622  1.00  0.00  
ATOM    206  CG  LYS    74      32.759 -23.250  41.518  0.00  0.00  
ATOM    207  ND  LYS    74      34.514 -25.035  41.341  0.00  0.00  
ATOM    208  CA  ILE    75      29.204 -18.783  39.380  1.00  0.00  
ATOM    209  CB  ILE    75      29.685 -18.490  37.102  0.00  0.00  
ATOM    210  CA  CYS    76      26.102 -17.450  41.075  1.00  0.00  
ATOM    211  CB  CYS    76      26.139 -17.569  42.591  0.00  0.00  
ATOM    212  SG  CYS    76      24.497 -17.562  43.397  1.00  0.00  
ATOM    213  CA  LYS    77      24.366 -14.176  40.019  1.00  0.00  
ATOM    214  CB  LYS    77      25.042 -12.804  39.930  1.00  0.00  
ATOM    215  CG  LYS    77      26.962 -11.541  38.742  0.00  0.00  
ATOM    216  ND  LYS    77      28.461  -9.503  38.437  0.00  0.00  
ATOM    217  CA  GLUC   78      21.544 -14.209  37.503  1.00  0.00  
ATOM    218  CB  GLUC   78      19.829 -14.727  38.106  0.00  0.00  
ATOM    219  OG  GLUC   78      17.578 -16.128  37.309  0.00  0.00  
TER              GLUC   78
ENDDAT 3.1
END
