

PFRMAT ABF1
TARGET T0042
AUTHOR 8972-3547-5850 AND 3067-5423-2224 Stan Galaktionov and Garland
AUTHOR R. Marshall, Washington University Center for Molecular Design,
AUTHOR Box 8036, 700 Laclede, St. Louis, MO 63220. E-mail: 
AUTHOR stas@ibc.wustl.edu and garland@ibc.wustl.edu
REMARK The procedure starts with the predictions of secondary structure 
REMARK using methods of Gibrat(J. Mol. Biol., 120, 425, 1978), 
REMARK Maxfield(Bioch.,15, 5138, 1976) and Qian(J. Mol. Biol., 202, 865,1988). 
REMARK The consensus location of secondary structure was used for 
REMARK prediction of coordinaton number vector (Rodionov, Mol. Biol., 
REMARK 26,777,1992). These data were used for the reconstruction of contact matrix
REMARK (Galaktionov, Proc. Int. Conf. Syst. Sci., 5, 326, 1994). On
REMARK the basis of this matrix, in turn, 3D prediction was carried out. The 
REMARK initial reconstruction  of spatial structure uses elements of distance 
REMARK geometry. A refinement procedure was oriented at correction of 
REMARK chosen intraglobular distances and removal of stressed contacts by 
REMARK minimization of the corresponding squared deviations (penalty 
REMARK function P ) with respect to Ca coordinates. Elements of non-local 
REMARK search were introduced by routinely and systematically inverting the 
REMARK configuration of loop fragments and controlling the change of the 
REMARK penalty function P. The set of structures with comparable values of 
REMARK penalty function P was obtained; they were used for correction of the
REMARK distance matrix for distance geometry algorithm, etc.
BEGDAT 3.1  3  0.3
ATOM      1  CA  GLY     1      -6.092   5.317  -2.338  1.00  0.00  
ATOM      2  CA  TYR     2      -8.469   3.771  -5.767  1.00  0.00  
ATOM      3  CA  PHE     3     -12.583   1.915  -5.637  1.00  0.00  
ATOM      4  CA  CYS     4     -14.640   0.972  -1.596  1.00  0.00  
ATOM      5  CA  GLU     5     -11.852  -0.141   1.886  1.00  0.00  
ATOM      6  CA  SER     6      -8.397   1.748   3.250  1.00  0.00  
ATOM      7  CA  CYS     7      -5.437  -0.530   2.615  1.00  0.00  
ATOM      8  CA  ARG     8      -7.972  -4.255   3.423  1.00  0.00  
ATOM      9  CA  LYS     9      -8.675  -2.565   7.433  1.00  0.00  
ATOM     10  CA  ILE    10      -4.423  -1.851   7.996  1.00  0.00  
ATOM     11  CA  ILE    11      -3.479  -5.974   6.626  1.00  0.00  
ATOM     12  CA  GLN    12      -6.401  -7.601   9.387  1.00  0.00  
ATOM     13  CA  LYS    13      -4.844  -5.159  12.705  1.00  0.00  
ATOM     14  CA  LEU    14      -0.812  -6.500  11.702  1.00  0.00  
ATOM     15  CA  GLU    15       3.184  -4.881  12.362  1.00  0.00  
ATOM     16  CA  ASP    16       4.705  -0.711  12.928  1.00  0.00  
ATOM     17  CA  MET    17       8.364   0.918  10.771  1.00  0.00  
ATOM     18  CA  VAL    18      10.503  -1.341   7.502  1.00  0.00  
ATOM     19  CA  GLY    19      11.838   0.219   3.567  1.00  0.00  
ATOM     20  CA  PRO    20      12.561   4.435   2.362  1.00  0.00  
ATOM     21  CA  GLN    21      13.200   6.160  -1.658  1.00  0.00  
ATOM     22  CA  PRO    22      10.217   7.394  -4.735  1.00  0.00  
ATOM     23  CA  ASN    23       6.545   9.883  -3.973  1.00  0.00  
ATOM     24  CA  GLU    24       5.004  11.179   0.026  1.00  0.00  
ATOM     25  CA  ASP    25       1.590   9.640   2.393  1.00  0.00  
ATOM     26  CA  THR    26      -1.727   6.917   1.226  1.00  0.00  
ATOM     27  CA  VAL    27      -1.684   2.563   0.198  1.00  0.00  
ATOM     28  CA  THR    28       0.066   0.050  -2.707  1.00  0.00  
ATOM     29  CA  GLN    29       4.033   0.903  -0.792  1.00  0.00  
ATOM     30  CA  ALA    30       2.191  -0.558   3.082  1.00  0.00  
ATOM     31  CA  ALA    31       0.656  -4.247   0.643  1.00  0.00  
ATOM     32  CA  SER    32       4.682  -4.576  -0.405  1.00  0.00  
ATOM     33  CA  GLN    33       6.603  -4.578   3.058  1.00  0.00  
ATOM     34  CA  VAL    34       3.532  -7.211   4.884  1.00  0.00  
ATOM     35  CA  CYS    35       4.226 -10.173   1.758  1.00  0.00  
ATOM     36  CA  ASP    36       8.755  -9.584   2.065  1.00  0.00  
ATOM     37  CA  LYS    37       7.325 -10.931   6.347  1.00  0.00  
ATOM     38  CA  LEU    38       2.549 -12.142   5.441  1.00  0.00  
ATOM     39  CA  LYS    39       1.006 -11.136   1.336  1.00  0.00  
ATOM     40  CA  ILE    40       1.799 -12.409  -2.838  1.00  0.00  
ATOM     41  CA  LEU    41       4.003  -9.438  -6.018  1.00  0.00  
ATOM     42  CA  ARG    42       6.626  -6.631  -4.024  1.00  0.00  
ATOM     43  CA  GLY    43       8.611  -5.314  -7.432  1.00  0.00  
ATOM     44  CA  LEU    44       5.055  -4.805  -9.752  1.00  0.00  
ATOM     45  CA  CYS    45       2.944  -2.661  -7.012  1.00  0.00  
ATOM     46  CA  LYS    46       6.378  -0.104  -5.901  1.00  0.00  
ATOM     47  CA  LYS    47       6.935   0.749 -10.213  1.00  0.00  
ATOM     48  CA  ILE    48       2.688   1.702 -10.670  1.00  0.00  
ATOM     49  CA  MET    49       2.731   4.324  -7.183  1.00  0.00  
ATOM     50  CA  ARG    50       6.325   6.326  -8.519  1.00  0.00  
ATOM     51  CA  SER    51       4.658   6.851 -12.471  1.00  0.00  
ATOM     52  CA  PHE    52       1.116   8.529 -10.910  1.00  0.00  
ATOM     53  CA  LEU    53       3.104  11.190  -8.202  1.00  0.00  
ATOM     54  CA  ARG    54       1.692  13.408  -4.605  1.00  0.00  
ATOM     55  CA  ARG    55       2.268  13.194  -0.369  1.00  0.00  
ATOM     56  CA  ILE    56      -0.169  12.586   3.289  1.00  0.00  
ATOM     57  CA  SER    57       1.510  11.674   7.418  1.00  0.00  
ATOM     58  CA  TRP    58       5.885  10.735   8.125  1.00  0.00  
ATOM     59  CA  ASP    59       7.664   6.567   8.088  1.00  0.00  
ATOM     60  CA  ILE    60       5.245   3.014   9.684  1.00  0.00  
ATOM     61  CA  LEU    61       0.804   3.223  10.206  1.00  0.00  
ATOM     62  CA  THR    62      -2.529   2.568   7.401  1.00  0.00  
ATOM     63  CA  GLY    63      -6.672   4.205   7.497  1.00  0.00  
ATOM     64  CA  LYS    64      -8.760   7.311   5.218  1.00  0.00  
ATOM     65  CA  LYS    65     -10.111   7.611   1.038  1.00  0.00  
ATOM     66  CA  PRO    66      -8.448   9.607  -2.527  1.00  0.00  
ATOM     67  CA  GLN    67      -6.627   8.000  -6.225  1.00  0.00  
ATOM     68  CA  ALA    68      -7.636   4.634  -8.843  1.00  0.00  
ATOM     69  CA  ILE    69      -5.853   0.854 -10.015  1.00  0.00  
ATOM     70  CA  CYS    70      -6.626  -3.372  -8.980  1.00  0.00  
ATOM     71  CA  VAL    71      -4.380  -6.870  -8.118  1.00  0.00  
ATOM     72  CA  ASP    72      -2.241  -9.442  -5.701  1.00  0.00  
ATOM     73  CA  ILE    73      -2.331 -11.972  -2.082  1.00  0.00  
ATOM     74  CA  LYS    74      -5.476 -11.424   1.317  1.00  0.00  
ATOM     75  CA  ILE    75      -9.774 -10.562  -0.301  1.00  0.00  
ATOM     76  CA  CYS    76     -10.150 -10.467  -4.905  1.00  0.00  
ATOM     77  CA  LYS    77      -7.741  -7.619  -7.484  1.00  0.00  
ATOM     78  CA  GLU    78      -8.359  -3.114  -7.343  1.00  0.00  
ENDDAT 3.1 
END
