

PFRMAT ABF1
TARGET T0037
AUTHOR 8972-3547-5850 AND 3067-5423-2224 Stan Galaktionov and Garland
AUTHOR R. Marshall, Washington University Center for Molecular Design,
AUTHOR Box 8036, 700 Laclede, St. Louis, MO 63220. E-mail: 
AUTHOR stas@ibc.wustl.edu and garland@ibc.wustl.edu
REMARK The procedure starts with the predictions of secondary structure 
REMARK using methods of Gibrat(J. Mol. Biol., 120, 425, 1978), 
REMARK Maxfield(Bioch.,15, 5138, 1976) and Qian(J. Mol. Biol., 202, 865,1988). 
REMARK The consensus location of secondary structure was used for 
REMARK prediction of coordinaton number vector (Rodionov, Mol. Biol., 
REMARK 26,777,1992). These data were used for the reconstruction of contact matrix
REMARK       (Galaktionov, Proc. Int. Conf. Syst. Sci., 5, 326, 1994). On
REMARK the basis of this matrix, in turn, 3D prediction was carried out. The 
REMARK initial reconstruction  of spatial structure uses elements of distance 
REMARK geometry. A refinement procedure was oriented at correction of 
REMARK chosen intraglobular distances and removal of stressed contacts by 
REMARK minimization of the corresponding squared deviations (penalty 
REMARK function P ) with respect to Ca coordinates. Elements of non-local 
REMARK search were introduced by routinely and systematically inverting the 
REMARK configuration of loop fragments and controlling the change of the 
REMARK penalty function P. The set of structures with comparable values of 
REMARK penalty function P was obtained; they were used for correction of the
REMARK distance matrix for distance geometry algorithm, etc.
BEGDAT 3.1  1  0.2
ATOM      1  CA  LYS     1      -1.986  -5.720   5.542  1.00  0.00  
ATOM      2  CA  SER     2      -2.057  -3.673   2.896  1.00  0.00  
ATOM      3  CA  ALA     3       0.231  -1.047   2.742  1.00  0.00  
ATOM      4  CA  LYS     4       3.610  -0.534   3.449  1.00  0.00  
ATOM      5  CA  ASP     5       3.847   1.108   5.877  1.00  0.00  
ATOM      6  CA  ALA     6       1.014   1.494   5.553  1.00  0.00  
ATOM      7  CA  LEU     7       1.184   4.411   6.454  1.00  0.00  
ATOM      8  CA  LEU     8       2.223   5.078   3.573  1.00  0.00  
ATOM      9  CA  LEU     9      -0.027   3.557   2.785  1.00  0.00  
ATOM     10  CA  TRP    10      -2.416   4.749   4.227  1.00  0.00  
ATOM     11  CA  CYS    11      -1.345   7.291   3.649  1.00  0.00  
ATOM     12  CA  GLN    12      -1.173   6.653   1.035  1.00  0.00  
ATOM     13  CA  MET    13      -4.144   6.042   0.385  1.00  0.00  
ATOM     14  CA  LYS    14      -4.990   8.808   1.998  1.00  0.00  
ATOM     15  CA  THR    15      -3.302  10.179   0.275  1.00  0.00  
ATOM     16  CA  ALA    16      -5.212   9.217  -1.509  1.00  0.00  
ATOM     17  CA  GLY    17      -7.960   9.227   0.673  1.00  0.00  
ATOM     18  CA  TYR    18      -8.044  11.739   2.695  1.00  0.00  
ATOM     19  CA  PRO    19     -10.986  11.500   3.855  1.00  0.00  
ATOM     20  CA  ASN    20     -10.486   8.833   5.228  1.00  0.00  
ATOM     21  CA  VAL    21     -10.247   7.563   9.133  1.00  0.00  
ATOM     22  CA  ASN    22      -8.594   5.081   8.511  1.00  0.00  
ATOM     23  CA  ILE    23      -8.263   3.017  11.045  1.00  0.00  
ATOM     24  CA  HIS    24     -10.665   2.812  10.365  1.00  0.00  
ATOM     25  CA  ASN    25     -11.441   2.625   7.507  1.00  0.00  
ATOM     26  CA  PHE    26      -9.110   0.544   5.579  1.00  0.00  
ATOM     27  CA  THR    27      -8.400  -1.586   7.061  1.00  0.00  
ATOM     28  CA  THR    28      -9.884  -4.105   5.737  1.00  0.00  
ATOM     29  CA  SER    29     -11.306  -4.001   4.297  1.00  0.00  
ATOM     30  CA  TRP    30     -11.879  -6.499   2.866  1.00  0.00  
ATOM     31  CA  ARG    31     -10.346  -9.213   3.658  1.00  0.00  
ATOM     32  CA  ASP    32      -7.759  -7.975   3.561  1.00  0.00  
ATOM     33  CA  GLY    33      -8.417  -5.844   5.076  1.00  0.00  
ATOM     34  CA  MET    34      -7.494  -6.710   6.389  1.00  0.00  
ATOM     35  CA  ALA    35      -5.813  -9.653   6.602  1.00  0.00  
ATOM     36  CA  PHE    36      -4.869 -11.425   3.796  1.00  0.00  
ATOM     37  CA  ASN    37      -6.205 -11.260   1.090  1.00  0.00  
ATOM     38  CA  ALA    38      -7.229 -13.196  -0.190  1.00  0.00  
ATOM     39  CA  LEU    39     -10.508 -13.702  -2.326  1.00  0.00  
ATOM     40  CA  ILE    40      -8.241 -13.367  -5.338  1.00  0.00  
ATOM     41  CA  HIS    41     -10.868 -11.163  -6.941  1.00  0.00  
ATOM     42  CA  LYS    42     -11.816  -9.342  -3.760  1.00  0.00  
ATOM     43  CA  HIS    43      -8.195  -8.398  -3.191  1.00  0.00  
ATOM     44  CA  ARG    44      -7.982  -6.983  -6.696  1.00  0.00  
ATOM     45  CA  PRO    45     -11.249  -5.130  -6.219  1.00  0.00  
ATOM     46  CA  ASP    46      -9.956  -3.560  -3.027  1.00  0.00  
ATOM     47  CA  LEU    47      -7.971  -5.647  -4.953  1.00  0.00  
ATOM     48  CA  ILE    48      -6.323  -3.288  -4.514  1.00  0.00  
ATOM     49  CA  ASP    49      -5.225  -4.529  -3.967  1.00  0.00  
ATOM     50  CA  PHE    50      -4.714  -6.991  -3.946  1.00  0.00  
ATOM     51  CA  ASP    51      -3.136  -5.482  -5.402  1.00  0.00  
ATOM     52  CA  LYS    52      -1.940  -3.016  -2.791  1.00  0.00  
ATOM     53  CA  LEU    53      -1.327  -5.938  -0.463  1.00  0.00  
ATOM     54  CA  LYS    54       0.006  -8.267  -3.132  1.00  0.00  
ATOM     55  CA  LYS    55       2.575  -5.678  -4.145  1.00  0.00  
ATOM     56  CA  SER    56       3.726  -5.372  -0.552  1.00  0.00  
ATOM     57  CA  ASN    57       3.844  -9.139  -0.197  1.00  0.00  
ATOM     58  CA  ALA    58       6.013  -9.417  -3.286  1.00  0.00  
ATOM     59  CA  HIS    59       8.178  -6.552  -2.090  1.00  0.00  
ATOM     60  CA  TYR    60       9.149  -9.322  -2.947  1.00  0.00  
ATOM     61  CA  ASN    61       9.826 -11.084  -1.181  1.00  0.00  
ATOM     62  CA  LEU    62      11.748  -8.948   0.826  1.00  0.00  
ATOM     63  CA  GLN    63      13.693  -5.915  -0.337  1.00  0.00  
ATOM     64  CA  ASN    64      10.770  -4.829  -2.484  1.00  0.00  
ATOM     65  CA  ALA    65       8.361  -5.422   0.374  1.00  0.00  
ATOM     66  CA  PHE    66      10.458  -3.257   2.664  1.00  0.00  
ATOM     67  CA  ASN    67      10.798  -0.632  -0.042  1.00  0.00  
ATOM     68  CA  LEU    68       7.042  -0.716  -0.501  1.00  0.00  
ATOM     69  CA  ALA    69       6.482  -0.313   3.221  1.00  0.00  
ATOM     70  CA  GLU    70       8.917   2.586   3.209  1.00  0.00  
ATOM     71  CA  GLN    71       7.131   4.191   0.283  1.00  0.00  
ATOM     72  CA  HIS    72       3.785   3.801   2.007  1.00  0.00  
ATOM     73  CA  LEU    73       5.192   5.226   5.220  1.00  0.00  
ATOM     74  CA  GLY    74       6.639   8.127   3.265  1.00  0.00  
ATOM     75  CA  LEU    75       4.859   8.723   0.765  1.00  0.00  
ATOM     76  CA  THR    76       4.160  11.415   0.931  1.00  0.00  
ATOM     77  CA  LYS    77       1.346  12.628   0.287  1.00  0.00  
ATOM     78  CA  LEU    78       1.137  15.917  -1.446  1.00  0.00  
ATOM     79  CA  LEU    79      -1.137  16.647  -3.118  1.00  0.00  
ATOM     80  CA  ASP    80      -1.692  13.392  -3.824  1.00  0.00  
ATOM     81  CA  PRO    81       3.005  11.446  -5.179  1.00  0.00  
ATOM     82  CA  GLU    82       3.262  11.686  -1.410  1.00  0.00  
ATOM     83  CA  ASP    83       5.470   8.612  -1.468  1.00  0.00  
ATOM     84  CA  ILE    84       7.355   9.569  -4.608  1.00  0.00  
ATOM     85  CA  SER    85       8.265  12.908  -3.076  1.00  0.00  
ATOM     86  CA  VAL    86       9.619  11.162  -0.002  1.00  0.00  
ATOM     87  CA  ASP    87      11.518   8.695  -2.155  1.00  0.00  
ATOM     88  CA  HIS    88      13.274   5.081  -1.552  1.00  0.00  
ATOM     89  CA  PRO    89      15.178   2.655  -1.909  1.00  0.00  
ATOM     90  CA  ASP    90      14.846   0.845  -4.333  1.00  0.00  
ATOM     91  CA  GLU    91      12.706  -1.351  -1.610  1.00  0.00  
ATOM     92  CA  LYS    92      11.285   0.939  -0.569  1.00  0.00  
ATOM     93  CA  SER    93       9.899   1.687  -1.344  1.00  0.00  
ATOM     94  CA  ILE    94       8.453  -0.892  -2.145  1.00  0.00  
ATOM     95  CA  ILE    95       7.991  -0.495  -5.007  1.00  0.00  
ATOM     96  CA  THR    96       6.669   2.450  -4.423  1.00  0.00  
ATOM     97  CA  TYR    97       4.150   1.577  -3.171  1.00  0.00  
ATOM     98  CA  VAL    98       2.420  -0.489  -2.807  1.00  0.00  
ATOM     99  CA  VAL    99       0.961   1.271  -1.589  1.00  0.00  
ATOM    100  CA  THR   100       0.457   3.511  -3.819  1.00  0.00  
ATOM    101  CA  TYR   101      -0.931   1.630  -5.573  1.00  0.00  
ATOM    102  CA  TYR   102      -3.137   0.646  -4.551  1.00  0.00  
ATOM    103  CA  HIS   103      -3.881   3.418  -4.272  1.00  0.00  
ATOM    104  CA  TYR   104      -4.438   4.348  -7.896  1.00  0.00  
ATOM    105  CA  PHE   105      -6.153   1.701  -8.915  1.00  0.00  
ATOM    106  CA  SER   106      -7.942   2.056  -7.387  1.00  0.00  
ATOM    107  CA  LYS   107      -8.711   4.580  -8.386  1.00  0.00  
ATOM    108  CA  MET   108     -10.066   4.058 -10.840  1.00  0.00  
ATOM    109  CA  LYS   109     -12.042   1.939 -10.066  1.00  0.00  
ENDDAT 3.1 
END
