

PFRMAT ABF1
TARGET T0030
AUTHOR 4926-8342-4702 D.J. Osguthorpe, University of Bath, djosg@mgu.bath.ac.uk
REMARK     t0030; Domain 1 of protein g3 from filamentous phage fd, 
REMARK     66a.a.
REMARK Ab initio folding using simplified geometry model with specifically
REMARK parameterised flexible internals and other potentials.
REMARK Molecular dynamics with cooling used as search technique.
REMARK Methods currently working to around 100 atoms
REMARK Method development specifically excluded small proteins with
REMARK disulphide bridges because of foldability problems of such proteins.
REMARK Disulphide bridges have been included between 6-35 and 45-52
REMARK - the protein may unfold in reduced form similar to PTI.
REMARK All model atoms have been submitted - however only CA atoms and
REMARK some CB atoms and SG atoms will correspond directly to standard
REMARK PDB atoms - rest of atoms correspond to centres of coordinates of
REMARK groups of PDB atoms e.g. OG corresponds to centre of CG, OD1, OD2
REMARK for ASP.
REMARK Atoms corresponding directly to PDB atoms are labelled 1.0 in
REMARK occupancy field, 0.0 for those not corresponding directly to PDB atoms
REMARK Expected CA RMS from correct fold is 4-6 angstroms
REMARK (i.e. simulations of known structures fluctuate at this level from
REMARK       the X-ray structure)
REMARK I have observed mis-folds with similar CA RMS values - RMS does not
REMARK discriminate between folds at this level - need to use your eyes!!
BEGDAT 3.1    1  .50
REMARK   check of folding parameters                                        86.4
REMARK  DATE:                                                                   
ATOM      1  CA  GLUN    1     104.488 -42.359  12.062  1.00  0.00  
ATOM      2  CB  GLUN    1     105.247 -43.037  13.675  0.00  0.00  
ATOM      3  OG  GLUN    1     104.589 -43.854  16.265  0.00  0.00  
ATOM      4  CA  THR     2     106.683 -39.366  11.053  1.00  0.00  
ATOM      5  CB  THR     2     106.847 -37.772  12.162  0.00  0.00  
ATOM      6  CA  VAL     3     109.737 -39.982   8.811  1.00  0.00  
ATOM      7  CB  VAL     3     109.923 -41.210   7.370  0.00  0.00  
ATOM      8  CA  GLU     4     112.080 -37.133   8.060  1.00  0.00  
ATOM      9  CB  GLU     4     113.115 -36.380   9.303  0.00  0.00  
ATOM     10  OG  GLU     4     113.200 -34.941  11.520  0.00  0.00  
ATOM     11  CA  SER     5     113.728 -37.191   4.608  1.00  0.00  
ATOM     12  CB  SER     5     115.264 -38.016   4.324  0.00  0.00  
ATOM     13  CA  CYS     6     111.779 -37.136   1.302  1.00  0.00  
ATOM     14  CB  CYS     6     110.412 -36.375   1.214  0.00  0.00  
ATOM     15  SG  CYS     6     109.595 -36.564   -.375  1.00  0.00  
ATOM     16  CA  LEU     7     114.217 -34.744   -.350  1.00  0.00  
ATOM     17  CB  LEU     7     113.659 -33.439   -.948  1.00  0.00  
ATOM     18  CG  LEU     7     112.558 -33.486  -2.504  0.00  0.00  
ATOM     19  CA  ALA     8     117.734 -34.180   1.029  1.00  0.00  
ATOM     20  CB  ALA     8     118.498 -35.403   1.621  1.00  0.00  
ATOM     21  CA  LYS     9     120.622 -31.769    .298  1.00  0.00  
ATOM     22  CB  LYS     9     121.898 -32.380   -.411  1.00  0.00  
ATOM     23  CG  LYS     9     124.040 -33.080    .773  0.00  0.00  
ATOM     24  ND  LYS     9     125.761 -34.691   1.531  0.00  0.00  
ATOM     25  CA  PRO    10     119.906 -28.122   -.136  1.00  0.00  
ATOM     26  CB  PRO    10     120.269 -27.298    .893  0.00  0.00  
ATOM     27  CA  HIS    11     119.806 -26.599  -3.608  1.00  0.00  
ATOM     28  CB  HIS    11     119.670 -27.496  -4.783  1.00  0.00  
ATOM     29  CG  HIS    11     121.414 -29.522  -4.834  0.00  0.00  
ATOM     30  CA  THR    12     118.352 -23.199  -4.524  1.00  0.00  
ATOM     31  CB  THR    12     119.412 -21.633  -4.969  0.00  0.00  
ATOM     32  CA  GLU    13     115.060 -23.522  -6.429  1.00  0.00  
ATOM     33  CB  GLU    13     114.769 -22.858  -8.183  0.00  0.00  
ATOM     34  OG  GLU    13     114.733 -20.636  -9.549  0.00  0.00  
ATOM     35  CA  ASN    14     112.708 -26.505  -6.007  1.00  0.00  
ATOM     36  CB  ASN    14     113.250 -27.767  -5.328  1.00  0.00  
ATOM     37  CG  ASN    14     112.224 -29.380  -5.753  0.00  0.00  
ATOM     38  CA  SER    15     109.120 -25.831  -4.988  1.00  0.00  
ATOM     39  CB  SER    15     108.419 -24.126  -4.846  0.00  0.00  
ATOM     40  CA  PHE    16     106.377 -28.378  -5.468  1.00  0.00  
ATOM     41  CB  PHE    16     106.666 -29.794  -5.958  1.00  0.00  
ATOM     42  CG  PHE    16     107.785 -29.900  -7.584  0.00  0.00  
ATOM     43  CD  PHE    16     108.868 -29.989  -9.135  0.00  0.00  
ATOM     44  CA  THR    17     103.267 -29.170  -3.519  1.00  0.00  
ATOM     45  CB  THR    17     102.132 -27.775  -2.790  0.00  0.00  
ATOM     46  CA  ASN    18     101.358 -32.327  -4.475  1.00  0.00  
ATOM     47  CB  ASN    18     102.139 -33.609  -4.779  1.00  0.00  
ATOM     48  CG  ASN    18     103.526 -33.322  -6.127  0.00  0.00  
ATOM     49  CA  VAL    19      97.871 -33.028  -3.107  1.00  0.00  
ATOM     50  CB  VAL    19      96.465 -31.797  -3.612  0.00  0.00  
ATOM     51  CA  TRP    20      96.604 -36.616  -3.402  1.00  0.00  
ATOM     52  CB  TRP    20      97.658 -37.625  -3.814  1.00  0.00  
ATOM     53  CG  TRP    20      99.215 -36.775  -5.870  0.00  0.00  
ATOM     54  CD  TRP    20      98.799 -38.360  -7.873  0.00  0.00  
ATOM     55  CA  LYS    21      94.015 -38.789  -1.573  1.00  0.00  
ATOM     56  CB  LYS    21      92.518 -38.578  -1.462  1.00  0.00  
ATOM     57  CG  LYS    21      90.825 -36.643  -1.201  0.00  0.00  
ATOM     58  ND  LYS    21      88.374 -35.918  -1.204  0.00  0.00  
ATOM     59  CA  ASP    22      94.701 -42.541  -2.111  1.00  0.00  
ATOM     60  CB  ASP    22      95.116 -42.840  -3.541  1.00  0.00  
ATOM     61  OG  ASP    22      93.701 -42.305  -4.761  0.00  0.00  
ATOM     62  CA  ASP    23      96.349 -44.886    .303  1.00  0.00  
ATOM     63  CB  ASP    23      95.721 -46.149    .815  1.00  0.00  
ATOM     64  OG  ASP    23      94.057 -45.817   1.762  0.00  0.00  
ATOM     65  CA  LYS    24      99.715 -45.029  -1.352  1.00  0.00  
ATOM     66  CB  LYS    24     100.342 -46.423  -1.458  1.00  0.00  
ATOM     67  CG  LYS    24     101.012 -48.322    .212  0.00  0.00  
ATOM     68  ND  LYS    24     101.428 -50.659   1.019  0.00  0.00  
ATOM     69  CA  THR    25     101.050 -42.729  -4.142  1.00  0.00  
ATOM     70  CB  THR    25      99.991 -41.202  -4.685  0.00  0.00  
ATOM     71  CA  LEU    26     104.806 -42.082  -4.524  1.00  0.00  
ATOM     72  CB  LEU    26     105.694 -43.062  -3.721  1.00  0.00  
ATOM     73  CG  LEU    26     105.268 -43.339  -1.932  0.00  0.00  
ATOM     74  CA  ASP    27     106.115 -41.386  -7.997  1.00  0.00  
ATOM     75  CB  ASP    27     104.982 -40.799  -8.825  1.00  0.00  
ATOM     76  OG  ASP    27     103.200 -41.433  -8.351  0.00  0.00  
ATOM     77  CA  ARG    28     109.666 -40.259  -8.695  1.00  0.00  
ATOM     78  CB  ARG    28     110.715 -41.322  -8.789  1.00  0.00  
ATOM     79  CG  ARG    28     112.240 -42.359  -6.972  0.00  0.00  
ATOM     80  ND  ARG    28     112.447 -44.434  -5.840  0.00  0.00  
ATOM     81  CA  TYR    29     110.684 -37.187 -10.692  1.00  0.00  
ATOM     82  CB  TYR    29     109.770 -35.937 -10.665  1.00  0.00  
ATOM     83  CG  TYR    29     110.241 -34.663 -12.120  0.00  0.00  
ATOM     84  CD  TYR    29     110.743 -33.144 -13.926  0.00  0.00  
ATOM     85  CA  ALA    30     114.500 -36.724 -10.492  1.00  0.00  
ATOM     86  CB  ALA    30     115.390 -36.785 -11.742  1.00  0.00  
ATOM     87  CA  ASN    31     114.063 -33.123  -9.398  1.00  0.00  
ATOM     88  CB  ASN    31     113.644 -31.989 -10.355  1.00  0.00  
ATOM     89  CG  ASN    31     115.071 -31.638 -11.660  0.00  0.00  
ATOM     90  CA  TYR    32     111.429 -34.175  -6.818  1.00  0.00  
ATOM     91  CB  TYR    32     110.020 -33.682  -7.028  1.00  0.00  
ATOM     92  CG  TYR    32     108.756 -34.311  -5.639  0.00  0.00  
ATOM     93  CD  TYR    32     107.161 -35.062  -3.989  0.00  0.00  
ATOM     94  CA  GLU    33     111.637 -37.641  -5.383  1.00  0.00  
ATOM     95  CB  GLU    33     113.215 -38.208  -4.554  0.00  0.00  
ATOM     96  OG  GLU    33     115.774 -38.590  -5.298  0.00  0.00  
ATOM     97  CA  GLY    34     108.485 -39.475  -4.163  1.00  0.00  
ATOM     98  CA  CYS    35     106.938 -39.694   -.687  1.00  0.00  
ATOM     99  CB  CYS    35     107.665 -38.971    .403  0.00  0.00  
ATOM    100  SG  CYS    35     107.490 -37.127    .269  1.00  0.00  
ATOM    101  CA  LEU    36     103.175 -39.974   -.186  1.00  0.00  
ATOM    102  CB  LEU    36     102.269 -39.787  -1.336  1.00  0.00  
ATOM    103  CG  LEU    36     102.790 -38.486  -2.589  0.00  0.00  
ATOM    104  CA  TRP    37     101.508 -42.276   2.386  1.00  0.00  
ATOM    105  CB  TRP    37     102.316 -42.902   3.576  1.00  0.00  
ATOM    106  CG  TRP    37     104.624 -44.295   2.935  0.00  0.00  
ATOM    107  CD  TRP    37     106.715 -42.670   2.648  0.00  0.00  
ATOM    108  CA  ASN    38      98.003 -42.021   3.936  1.00  0.00  
ATOM    109  CB  ASN    38      97.836 -41.921   5.457  1.00  0.00  
ATOM    110  CG  ASN    38      99.178 -42.920   6.434  0.00  0.00  
ATOM    111  CA  ALA    39      94.755 -40.547   2.613  1.00  0.00  
ATOM    112  CB  ALA    39      93.511 -41.471   2.633  1.00  0.00  
ATOM    113  CA  THR    40      93.993 -36.850   2.798  1.00  0.00  
ATOM    114  CB  THR    40      93.595 -36.017   4.421  0.00  0.00  
ATOM    115  CA  GLY    41      97.309 -35.743   1.464  1.00  0.00  
ATOM    116  CA  VAL    42      99.289 -32.518   1.063  1.00  0.00  
ATOM    117  CB  VAL    42      98.678 -30.876   1.935  0.00  0.00  
ATOM    118  CA  VAL    43     103.056 -32.591    .509  1.00  0.00  
ATOM    119  CB  VAL    43     103.979 -33.836   -.651  0.00  0.00  
ATOM    120  CA  VAL    44     104.777 -29.180    .664  1.00  0.00  
ATOM    121  CB  VAL    44     104.724 -28.162   2.257  0.00  0.00  
ATOM    122  CA  CYS    45     108.113 -28.016   -.692  1.00  0.00  
ATOM    123  CB  CYS    45     108.709 -28.750  -1.949  0.00  0.00  
ATOM    124  SG  CYS    45     108.679 -30.580  -1.816  1.00  0.00  
ATOM    125  CA  THR    46     109.645 -24.521   -.396  1.00  0.00  
ATOM    126  CB  THR    46     109.642 -23.515   1.181  0.00  0.00  
ATOM    127  CA  GLY    47     112.571 -23.619  -2.586  1.00  0.00  
ATOM    128  CA  ASP    48     115.379 -21.185  -1.815  1.00  0.00  
ATOM    129  CB  ASP    48     115.185 -19.981   -.899  1.00  0.00  
ATOM    130  OG  ASP    48     114.112 -18.590  -1.770  0.00  0.00  
ATOM    131  CA  GLU    49     117.468 -23.681    .095  1.00  0.00  
ATOM    132  CB  GLU    49     118.158 -23.471   1.837  0.00  0.00  
ATOM    133  OG  GLU    49     119.974 -22.008   3.439  0.00  0.00  
ATOM    134  CA  THR    50     114.967 -26.586   -.168  1.00  0.00  
ATOM    135  CB  THR    50     115.542 -28.120  -1.211  0.00  0.00  
ATOM    136  CA  GLN    51     112.822 -27.522   2.809  1.00  0.00  
ATOM    137  CB  GLN    51     112.646 -26.164   4.106  0.00  0.00  
ATOM    138  CG  GLN    51     115.354 -26.255   4.524  0.00  0.00  
ATOM    139  CA  CYS    52     109.772 -29.695   2.533  1.00  0.00  
ATOM    140  CB  CYS    52     109.792 -31.064   1.945  0.00  0.00  
ATOM    141  SG  CYS    52     110.715 -31.099    .293  1.00  0.00  
ATOM    142  CA  TYR    53     107.058 -30.253   5.197  1.00  0.00  
ATOM    143  CB  TYR    53     106.688 -28.962   5.915  1.00  0.00  
ATOM    144  CG  TYR    53     108.293 -28.060   6.652  0.00  0.00  
ATOM    145  CD  TYR    53     110.276 -26.986   7.630  0.00  0.00  
ATOM    146  CA  GLY    54     104.768 -33.297   4.741  1.00  0.00  
ATOM    147  CA  THR    55     101.143 -33.590   5.860  1.00  0.00  
ATOM    148  CB  THR    55     100.176 -32.050   5.986  0.00  0.00  
ATOM    149  CA  TRP    56      99.223 -36.897   5.626  1.00  0.00  
ATOM    150  CB  TRP    56     100.080 -38.036   5.204  1.00  0.00  
ATOM    151  CG  TRP    56     101.283 -37.826   2.783  0.00  0.00  
ATOM    152  CD  TRP    56     103.812 -37.112   3.067  0.00  0.00  
ATOM    153  CA  VAL    57      96.228 -37.815   7.740  1.00  0.00  
ATOM    154  CB  VAL    57      95.085 -39.283   7.216  0.00  0.00  
ATOM    155  CA  PRO    58      98.778 -39.110  10.238  1.00  0.00  
ATOM    156  CB  PRO    58      98.535 -40.334  10.836  0.00  0.00  
ATOM    157  CA  ILE    59     102.389 -39.132   8.988  1.00  0.00  
ATOM    158  CB  ILE    59     102.875 -40.745   7.360  0.00  0.00  
ATOM    159  CA  GLY    60     104.554 -36.187   8.004  1.00  0.00  
ATOM    160  CA  LEU    61     107.996 -36.010   6.514  1.00  0.00  
ATOM    161  CB  LEU    61     108.153 -36.579   5.084  1.00  0.00  
ATOM    162  CG  LEU    61     107.528 -38.349   4.785  0.00  0.00  
ATOM    163  CA  ALA    62     110.141 -32.921   7.131  1.00  0.00  
ATOM    164  CB  ALA    62     110.050 -32.135   8.423  1.00  0.00  
ATOM    165  CA  ILE    63     113.499 -32.806   5.349  1.00  0.00  
ATOM    166  CB  ILE    63     114.023 -31.976   3.207  0.00  0.00  
ATOM    167  CA  PRO    64     116.863 -33.311   7.014  1.00  0.00  
ATOM    168  CB  PRO    64     117.855 -34.100   6.417  0.00  0.00  
ATOM    169  CA  GLU    65     118.546 -30.174   8.374  1.00  0.00  
ATOM    170  CB  GLU    65     117.998 -29.358   9.938  0.00  0.00  
ATOM    171  OG  GLU    65     115.839 -28.418  11.213  0.00  0.00  
ATOM    172  CA  ASNC   66     122.254 -29.361   8.236  1.00  0.00  
ATOM    173  CB  ASNC   66     122.691 -27.919   8.428  1.00  0.00  
ATOM    174  CG  ASNC   66     122.370 -26.870   6.826  0.00  0.00  
TER              ASNC   66
ENDDAT 3.1
END
