
PFRMAT ABF1
TARGET T0005
AUTHOR 4460-7353-9613 Hubbard/Park/Reinhardt, CPE.
REMARK 1.1 hand edited version of PHD prediction
REMARK 2.1 contact pattern between secondary structures
REMARK 2.1 based on proposed structural similarity to
REMARK 2.1 fragments from Periplasmic binding protein-like II; 
REMARK 2.1 2,3-Dihydroxybiphenyl dioxygenase motif etc. supported
REMARK 2.1 by predicted beta-strand pairs from PREDBB
BEGDAT 1.1  1  1.0
SS 269
V C 0.90
Q C 0.10
I E 0.30
H E 0.30
D E 0.10
I C 0.40
T C 0.70
G C 0.70
K C 0.40
D H 0.30
C H 0.80
Q H 0.90
D H 0.90
I H 0.90
A H 0.90
N H 0.80
K H 0.20
G C 0.80
A C 0.90
K C 0.90
Q C 0.70
S C 0.70
G E 0.10
L E 0.70
Y E 0.90
F E 0.90
I E 0.90
K E 0.90
P E 0.70
L C 0.80
K C 0.90
A C 0.90
N C 0.80
Q C 0.80
Q C 0.50
F E 0.60
L E 0.90
V E 0.90
Y E 0.90
C E 0.80
E E 0.60
I C 0.30
D C 0.70
G C 0.80
S C 0.80
G C 0.90
N C 0.90
G C 0.40
W E 0.50
T E 0.80
V E 0.90
F E 0.90
Q E 0.80
K E 0.70
R C 0.30
L C 0.60
D C 0.90
G C 0.90
S C 0.60
V C 0.20
D C 0.10
F H 0.40
K H 0.70
K H 0.60
N H 0.70
W H 0.90
I H 0.90
Q H 0.90
Y H 0.90
K H 0.90
E H 0.80
G H 0.30
F C 0.40
G C 0.70
H C 0.20
L C 0.50
S C 0.80
P C 0.80
T C 0.90
G C 0.90
T C 0.90
T E 0.50
E E 0.30
F E 0.20
W C 0.00
L C 0.20
G C 0.50
N C 0.30
E H 0.20
K H 0.60
I H 0.70
H H 0.80
L H 0.70
I H 0.50
S H 0.10
T C 0.20
Q C 0.50
S C 0.90
A C 0.90
I C 0.70
P C 0.70
Y E 0.30
A E 0.80
L E 0.90
R E 0.90
V E 0.90
E E 0.80
L E 0.70
E E 0.10
D C 0.40
W C 0.70
N C 0.80
G C 0.70
R C 0.50
T C 0.10
S E 0.30
T E 0.60
A E 0.80
D E 0.70
Y E 0.70
A E 0.50
M E 0.60
F E 0.60
K E 0.80
V E 0.60
G C 0.30
P C 0.60
E C 0.30
A C 0.10
D H 0.30
K H 0.10
Y H 0.80
R H 0.90
L E 0.90
T E 0.90
Y E 0.90
A E 0.60
Y E 0.10
F E 0.50
A C 0.60
G C 0.60
G C 0.50
D H 0.10
A H 0.20
G H 0.30
D H 0.80
A H 0.90
F H 0.80
D H 0.60
G H 0.30
F C 0.30
D C 0.50
F C 0.70
G C 0.80
D C 0.80
D C 0.80
P C 0.90
S C 0.90
D C 0.90
K C 0.30
F E 0.50
F E 0.70
T E 0.50
S E 0.30
H C 0.20
N C 0.60
G C 0.50
M C 0.10
Q E 0.50
F E 0.60
S E 0.60
T E 0.40
W C 0.10
D C 0.50
N C 0.90
D C 0.90
N C 0.80
D C 0.50
K H 0.20
F H 0.20
E H 0.30
G H 0.30
N H 0.20
C C 0.10
A E 0.10
E E 0.20
Q E 0.10
D C 0.10
G C 0.60
S C 0.70
G C 0.40
W H 0.20
W H 0.20
M H 0.10
N H 0.60
K H 0.80
C H 0.70
H H 0.40
A H 0.30
G C 0.10
H C 0.50
L C 0.70
N C 0.80
G C 0.30
V E 0.10
Y E 0.30
Y E 0.00
Q C 0.50
G C 0.80
G C 0.80
T E 0.30
Y E 0.30
S E 0.30
K C 0.70
A C 0.70
S C 0.90
T C 0.90
P C 0.80
N C 0.80
G C 0.80
Y C 0.60
D C 0.70
N C 0.90
G C 0.70
I E 0.80
I E 0.90
W E 0.90
A E 0.90
T E 0.90
W E 0.50
K C 0.10
T C 0.40
R C 0.20
W E 0.30
Y E 0.70
S E 0.70
M E 0.70
K E 0.40
K E 0.80
T E 0.70
T E 0.70
M E 0.70
K E 0.80
I E 0.60
I E 0.30
P C 0.20
F C 0.70
N C 0.60
R H 0.30
L H 0.30
T H 0.30
I H 0.30
G H 0.30
E H 0.30
G C 0.70
Q C 0.40
Q C 0.40
H C 0.30
H C 0.40
L C 0.60
G C 0.80
G C 0.80
A H 0.30
K H 0.30
Q H 0.30
A H 0.30
G C 0.90
D C 0.90
V C 0.90
ENDDAT 1.1
BEGDAT 2.1  1   .5  1
34
1 2 OT 0.10 0 0 0.00
1 5 KK 0.60 0 0 0.00
1 6 OT 0.40 0 0 0.00
1 7 KK 0.60 0 0 0.00
2 3 OT 0.20 0 0 0.00
2 4 PE 0.40 0 0 0.00
2 5 OT 0.40 0 0 0.00
3 4 HH 0.90 0 0 0.00
4 5 HH 0.90 0 0 0.00
5 6 OT 0.20 0 0 0.00
6 7 OT 0.20 0 0 0.00
7 8 OT 0.20 0 0 0.00
7 22 HH 0.70 0 0 0.00
7 24 OT 0.10 0 0 0.00
8 9 OT 0.20 0 0 0.00
8 22 PE 0.40 0 0 0.00
9 22 HH 0.70 0 0 0.00
9 23 PE 0.10 0 0 0.00
10 17 HH 0.60 0 0 0.00 
10 18 PE 0.20 0 0 0.00
10 19 HH 0.60 0 0 0.00
10 21 HH 0.60 0 0 0.00
12 13 OT 0.10 0 0 0.00
12 16 OT 0.40 0 0 0.00
13 17 OT 0.10 0 0 0.00
12 14 KK 0.60 0 0 0.00
12 17 KK 0.60 0 0 0.00
14 15 HH 0.60 0 0 0.00
16 17 OT 0.20 0 0 0.00
17 18 OT 0.10 0 0 0.00
19 20 HH 0.60 0 0 0.00
22 23 OT 0.20 0 0 0.00
22 24 PE 0.20 0 0 0.00
23 24 PE 0.50 0 0 0.00
ENDDAT 2.1

