
PFRMAT ABF1
TARGET T0002
AUTHOR 9476-8839-1393 Jeremy Webber, Ruben Abagyan,
AUTHOR 9476-8839-1393 Abagyan Lab, Skirball Institute
AUTHOR 9476-8839-1393 NYU Medical Center, NY, NY 10016
REMARK==========================================================
REMARK The N-terminal 327 amino acids is predicted by comparative
REMARK modeling using tryptophan synthase (submitted seperately)
REMARK It is only the last 187 amino acids that are predicted 
REMARK ab initio.  This is the second of two predictions submitted
REMARK for this target from our lab.
REMARK
REMARK Previous experiments have targeted the c-terminal potion 
REMARK this protein to be involved with regulation via binding to
REMARK isoleucine and valine.  While the E. coli leucine-isoleucine-valine 
REMARK protein was not found to align well with this region,
REMARK we found a protein, dihydrodipicolinate reductase (1dih), 
REMARK that not only has the same architecture as the 
REMARK leucine-isoleucine-valine binding protein, namely
REMARK two domains of beta sheets surrounded by alpha helices, but
REMARK also aligns well with the c-terminus.  This is the protein
REMARK used as a template in this prediction.
REMARK 
REMARK==========================================================
# TARGET T0002 sequence:
# MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILV
# KREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSAR
# LGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQG
# FTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLI
# KQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDE
# TFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYI
# ALHNIRGERLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKG
# SFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLN
# DGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
# LNTLGTYWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCH
# DETNNPAFRFFLAG
BEGDAT 1.1  1  1.00
SS 514
M C  0.80
A C  0.80
D C  0.80
S C  0.80
Q C  0.80
P C  0.80
L H  1.00
S H  1.00
G H  1.00
A H  1.00
P H  1.00
E H  1.00
G H  0.80
A H  0.80
E H  1.00
Y H  1.00
L H  1.00
R H  1.00
A H  1.00
V H  1.00
L H  1.00
R H  1.00
A H  1.00
P H  1.00
V H  1.00
Y H  1.00
E H  0.80
A H  0.80
A H  0.80
Q H  0.80
V C  1.00
T C  1.00
P E  1.00
L E  1.00
Q E  1.00
K E  1.00
M E  1.00
E C  1.00
K C  1.00
L C  1.00
S C  1.00
S C  1.00
R C  1.00
L C  1.00
D C  1.00
N E  1.00
V E  1.00
I E  1.00
L E  1.00
V E  1.00
K E  1.00
R E  1.00
E C  1.00
D C  1.00
R C  1.00
Q C  1.00
P C  1.00
V C  1.00
H C  1.00
S C  1.00
F C  1.00
K H  1.00
L H  1.00
R H  1.00
G H  1.00
A H  1.00
Y H  1.00
A H  1.00
M H  1.00
M H  1.00
A H  1.00
G H  1.00
L C  1.00
T C  1.00
E C  1.00
E C  1.00
Q C  1.00
K C  1.00
A E  1.00
H E  1.00
G E  1.00
V E  1.00
I E  1.00
T E  1.00
A E  1.00
S C  1.00
A C  1.00
G C  1.00
N C  1.00
H H  1.00
A H  1.00
Q H  1.00
G H  1.00
V H  1.00
A H  1.00
F H  1.00
S H  1.00
S H  1.00
A H  1.00
R C  1.00
L C  1.00
G C  1.00
V E  1.00
K E  1.00
A E  1.00
L E  1.00
I E  1.00
V E  1.00
M E  1.00
P C  1.00
T C  1.00
A C  1.00
T C  1.00
A C  1.00
D C  1.00
I C  1.00
K H  0.80
V H  0.80
D H  0.80
A H  1.00
V H  1.00
R H  1.00
G C  1.00
F C  1.00
G C  1.00
G E  1.00
E E  1.00
V E  1.00
L C  1.00
L C  1.00
H C  1.00
G C  1.00
A C  1.00
N C  1.00
F H  1.00
D H  1.00
E H  1.00
A H  1.00
K H  1.00
A H  1.00
K H  1.00
A H  1.00
I H  1.00
E H  0.80
L H  0.80
S E  1.00
Q C  0.80
Q C  0.80
Q C  0.80
G C  0.80
F C  1.00
T C  1.00
W C  1.00
V C  1.00
P C  1.00
P H  0.80
F H  0.80
D H  0.80
H H  0.80
P H  1.00
M H  1.00
V C  0.80
I C  0.60
A C  0.60
G C  0.60
Q C  0.80
G H  1.00
T H  1.00
L H  1.00
A H  1.00
L H  1.00
E H  1.00
L H  1.00
L H  1.00
Q H  1.00
Q H  1.00
D H  0.80
A H  0.80
H H  0.80
L H  0.80
D E  1.00
R E  1.00
V E  1.00
F E  1.00
V E  1.00
P E  1.00
V E  1.00
G C  1.00
G C  1.00
G C  1.00
G H  1.00
L H  1.00
A H  1.00
A H  1.00
G H  1.00
V H  0.90
A H  0.90
V H  0.90
L H  1.00
I H  1.00
K C  0.80
Q C  0.80
L C  0.80
M C  1.00
P C  1.00
Q E  0.80
I E  0.80
K E  0.90
V E  0.90
I E  1.00
A E  1.00
V E  1.00
E E  1.00
A E  1.00
E C  0.80
D C  1.00
S C  1.00
A C  1.00
C C  1.00
L C  1.00
K C  1.00
A C  1.00
A C  1.00
L C  1.00
D C  1.00
A C  1.00
G C  1.00
H C  1.00
P C  1.00
V C  1.00
D C  1.00
L C  1.00
P C  1.00
R C  1.00
V C  1.00
G C  1.00
L C  1.00
F C  1.00
A C  1.00
E C  1.00
G C  1.00
V C  1.00
A C  1.00
V C  1.00
K C  1.00
R C  1.00
I C  1.00
G C  1.00
D C  0.70
E C  0.80
T C  0.80
F C  0.80
R C  0.80
L C  0.80
C C  0.80
Q C  0.80
E H  1.00
Y H  0.80
L H  0.80
D H  0.80
D H  0.80
I H  0.80
I H  0.80
T C  0.80
V C  0.80
D E  0.80
S E  0.80
D E  0.80
A E  0.80
I C  0.80
C H  1.00
A H  1.00
A H  1.00
M H  1.00
K H  1.00
D H  1.00
L H  1.00
F H  1.00
E H  1.00
D C  1.00
V C  1.00
R C  1.00
A C  1.00
V C  1.00
A H  0.80
E H  0.80
P H  1.00
S H  1.00
G H  1.00
A H  1.00
L H  1.00
A H  1.00
L H  1.00
A H  1.00
G H  1.00
M H  1.00
K H  1.00
K H  1.00
Y H  1.00
I H  1.00
A C  0.80
L C  0.80
H C  1.00
N E  0.80
I E  0.80
R E  0.80
G E  1.00
E E  1.00
R E  1.00
L E  1.00
A C  0.80
H C  0.80
I C  0.80
L C  1.00
S C  1.00
G C  1.00
A H  0.80
N H  0.80
V H  1.00
N H  1.00
F H  1.00
H H  1.00
G H  1.00
L H  1.00
R H  1.00
Y H  1.00
V H  1.00
S H  0.80
E H  0.80
R H  0.80
C C  0.25
E C  0.25
L C  0.25
G C  0.25
E C  0.25
Q C  0.25
R C  0.25
E C  0.25
A E  0.25
L E  0.25
L E  0.25
A E  0.25
V E  0.25
T C  0.25
I C  0.25
P C  0.25
E H  0.25
E H  0.25
K H  0.25
G H  0.25
S H  0.25
F H  0.25
L H  0.25
K H  0.25
F H  0.25
C H  0.25
Q H  0.25
L H  0.25
L C  0.25
G C  0.25
G E  0.25
R E  0.25
S E  0.25
V E  0.25
T C  0.10
E C  0.10
F C  0.10
N C  0.10
Y H  0.10
R H  0.25
F H  0.25
A H  0.25
D H  0.25
A H  0.25
K C  0.25
N E  0.25
A E  0.25
C E  0.25
I E  0.25
F E  0.25
V E  0.25
G C  0.25
V C  0.25
R C  0.10
L C  0.10
S C  0.10
R C  0.10
G C  0.25
L C  0.25
E H  0.25
E H  0.25
R H  0.25
K H  0.25
E H  0.25
I H  0.25
L H  0.25
Q H  0.25
M H  0.25
L H  0.25
N H  0.25
D H  0.25
G H  0.25
G H  0.25
Y H  0.25
S H  0.25
V H  0.25
V C  0.25
D C  0.25
L C  0.25
S E  0.25
D E  0.25
D E  0.25
E E  0.25
M E  0.25
A E  0.25
K E  0.25
L E  0.25
H E  0.25
V E  0.25
R C  0.25
Y C  0.25
M C  0.25
V C  0.25
G C  0.25
G C  0.25
R C  0.25
P C  0.25
S H  0.25
H H  0.25
P H  0.25
L H  0.25
Q H  0.25
E H  0.25
R H  0.25
L H  0.25
Y H  0.25
S H  0.25
F H  0.25
E H  0.25
F H  0.25
P C  0.10
E C  0.10
S C  0.10
P C  0.10
G C  0.10
A C  0.10
L C  0.25
L C  0.25
R C  0.25
F C  0.25
L C  0.25
N C  0.25
T C  0.25
L C  0.25
G C  0.25
T C  0.25
Y C  0.25
W C  0.25
N C  0.25
I C  0.25
S C  0.25
L C  0.25
F C  0.25
H C  0.25
Y C  0.25
R C  0.25
S C  0.25
H C  0.25
G C  0.25
T E  0.25
D E  0.25
Y E  0.25
G E  0.25
R E  0.25
V E  0.25
L E  0.25
A E  0.25
A E  0.25
F C  0.10
E C  0.25
L E  0.25
G E  0.25
D E  0.25
H E  0.25
E E  0.25
P E  0.25
D E  0.25
F E  0.25
E E  0.25
T E  0.25
R C  0.25
L C  0.10
N C  0.10
E C  0.10
L C  0.10
G C  0.10
Y C  0.25
D E  0.25
C E  0.25
H E  0.25
D E  0.25
E E  0.25
T E  0.25
N E  0.25
N E  0.25
P E  0.25
A E  0.25
F C  0.25
R C  0.25
F H  0.25
F H  0.25
L H  0.25
A H  0.25
G H  0.25
ENDDAT 1.1
END
