
PFRMAT CMF1
TARGET T0001
AUTHOR 5865-8356-4011 ANDRAS ASZODI, NIMR, a-aszodi@nimr.mrc.ac.uk
MODEL  1
BEGPDB
PDBSET 1 NOREFINE DRAGON (C-alpha trace)
REMARK Average of 20 C-alpha structures produced by DRAGON-4.
REMARK C-alpha RMS deviation of structures from average:
REMARK     BEST RMS=2.3105e-01 A
REMARK     WORST RMS=1.0656e+00 A
REMARK     AVERAGE RMS=4.3093e-01 +/- 1.8694e-01 A
REMARK THE B-FACTOR FIELD CONTAINS THE STANDARD DEVIATION OF
REMARK DISTANCES OF C-ALPHA ATOMS FROM THE CORRESPONDING AVERAGE
REMARK POSITIONS. THIS IS A MEASURE OF PRECISION RATHER THAN ACCURACY.
ATOM      1  CA  MET     1       4.666 -10.240  -5.343  1.00  0.58
ATOM      2  CA  GLU     2       4.927 -10.401  -1.679  1.00  1.04
ATOM      3  CA  LEU     3       2.730  -7.934   0.232  1.00  0.29
ATOM      4  CA  VAL     4       3.410  -5.321  -2.048  1.00  0.98
ATOM      5  CA  SER     5       3.253  -2.305  -2.128  1.00  0.15
ATOM      6  CA  VAL     6       3.204   0.264  -0.176  1.00  0.10
ATOM      7  CA  ALA     7       2.314   3.350  -1.108  1.00  0.06
ATOM      8  CA  ALA     8       2.702   5.892   0.842  1.00  0.05
ATOM      9  CA  LEU     9       3.396   8.906   2.302  1.00  0.06
ATOM     10  CA  ALA    10       7.010   9.499   1.380  1.00  0.07
ATOM     11  CA  GLU    11      10.462   9.523   2.242  1.00  0.08
ATOM     12  CA  ASN    12      10.531  10.769   5.937  1.00  0.10
ATOM     13  CA  ARG    13       7.570   9.308   7.373  1.00  0.09
ATOM     14  CA  VAL    14       4.477  11.270   7.203  1.00  0.11
ATOM     15  CA  ILE    15       2.002   8.024   7.063  1.00  0.10
ATOM     16  CA  GLY    16      -1.122   9.960   6.337  1.00  0.13
ATOM     17  CA  ARG    17      -1.427  11.735   9.893  1.00  0.26
ATOM     18  CA  ASP    18      -5.040  11.773  10.390  1.00  0.19
ATOM     19  CA  GLY    19      -6.968  12.779   7.441  1.00  0.14
ATOM     20  CA  GLU    20      -6.463  12.945   3.775  1.00  0.11
ATOM     21  CA  LEU    21      -2.846  13.321   3.157  1.00  0.21
ATOM     22  CA  PRO    22      -2.161  17.127   3.247  1.00  0.33
ATOM     23  CA  TRP    23       0.336  17.403   0.536  1.00  0.67
ATOM     24  CA  PRO    24      -0.380  15.050  -1.792  1.00  2.12
ATOM     25  CA  SER    25      -2.806  16.528  -4.184  1.00  0.53
ATOM     26  CA  ILE    26      -0.744  15.557  -6.773  1.00  0.90
ATOM     27  CA  PRO    27      -2.566  13.883  -9.537  1.00  0.19
ATOM     28  CA  ALA    28       0.731  12.207 -11.161  1.00  0.13
ATOM     29  CA  ASP    29       1.245   9.827  -7.865  1.00  0.07
ATOM     30  CA  LYS    30      -2.796   8.980  -7.899  1.00  0.08
ATOM     31  CA  LYS    31      -2.519   8.378 -11.994  1.00  0.11
ATOM     32  CA  GLN    32       0.907   6.137 -11.255  1.00  0.10
ATOM     33  CA  TYR    33      -1.158   4.256  -8.226  1.00  0.08
ATOM     34  CA  ARG    34      -4.229   3.542 -10.841  1.00  0.10
ATOM     35  CA  SER    35      -1.479   2.150 -13.628  1.00  0.11
ATOM     36  CA  ARG    36      -0.075  -0.479 -10.801  1.00  0.10
ATOM     37  CA  ILE    37      -3.577  -1.086  -9.330  1.00  0.10
ATOM     38  CA  ALA    38      -6.465  -1.694 -11.807  1.00  0.09
ATOM     39  CA  ASP    39      -7.617  -5.158 -10.607  1.00  0.10
ATOM     40  CA  ASP    40      -4.906  -5.982  -8.014  1.00  0.10
ATOM     41  CA  PRO    41      -6.756  -8.081  -5.565  1.00  0.11
ATOM     42  CA  VAL    42      -6.927  -6.680  -2.418  1.00  0.09
ATOM     43  CA  VAL    43      -5.719  -3.969  -0.944  1.00  0.06
ATOM     44  CA  LEU    44      -5.745  -2.166   1.840  1.00  0.04
ATOM     45  CA  GLY    45      -7.119  -2.737   5.071  1.00  0.05
ATOM     46  CA  ARG    46     -10.040  -0.320   5.394  1.00  0.06
ATOM     47  CA  THR    47      -8.173   2.792   7.035  1.00  0.06
ATOM     48  CA  THR    48      -7.488   4.534   3.447  1.00  0.08
ATOM     49  CA  PHE    49     -11.196   2.935   2.193  1.00  0.10
ATOM     50  CA  GLU    50     -13.002   5.759   4.508  1.00  0.09
ATOM     51  CA  SER    51     -11.035   8.651   2.407  1.00  0.12
ATOM     52  CA  MET    52     -11.220   6.844  -1.035  1.00  0.22
ATOM     53  CA  ARG    53     -14.870   7.089  -2.004  1.00  0.43
ATOM     54  CA  ASP    54     -16.142   4.047  -2.948  1.00  1.01
ATOM     55  CA  ASP    55     -14.776   0.887  -3.697  1.00  0.11
ATOM     56  CA  LEU    56     -11.609   1.545  -5.837  1.00  0.27
ATOM     57  CA  PRO    57     -12.978   0.249  -9.254  1.00  0.13
ATOM     58  CA  GLY    58     -12.139  -3.269  -9.340  1.00  0.10
ATOM     59  CA  SER    59      -9.776  -4.169  -6.389  1.00  0.08
ATOM     60  CA  ALA    60     -12.519  -6.568  -4.782  1.00  0.09
ATOM     61  CA  GLN    61     -11.736  -7.087  -1.566  1.00  0.38
ATOM     62  CA  ILE    62     -10.607  -4.539   0.351  1.00  0.09
ATOM     63  CA  VAL    63     -10.240  -4.611   3.468  1.00  0.19
ATOM     64  CA  MET    64      -9.648  -2.743   6.396  1.00  0.17
ATOM     65  CA  SER    65     -10.645  -5.343   8.787  1.00  0.40
ATOM     66  CA  ARG    66     -12.934  -6.671  10.936  1.00  0.30
ATOM     67  CA  SER    67     -14.115  -3.638  12.979  1.00  0.52
ATOM     68  CA  GLU    68     -17.584  -3.889  13.149  1.00  0.76
ATOM     69  CA  ARG    69     -19.585  -6.582  11.443  1.00  0.52
ATOM     70  CA  SER    70     -19.185  -5.729   7.751  1.00  0.26
ATOM     71  CA  PHE    71     -19.587  -1.855   7.920  1.00  0.17
ATOM     72  CA  SER    72     -21.677  -1.058   5.010  1.00  0.18
ATOM     73  CA  VAL    73     -19.969  -1.611   1.791  1.00  0.25
ATOM     74  CA  ASP    74     -21.296  -5.045   0.613  1.00  0.27
ATOM     75  CA  THR    75     -18.465  -6.441  -1.333  1.00  0.11
ATOM     76  CA  ALA    76     -14.969  -5.708  -0.217  1.00  0.52
ATOM     77  CA  HIS    77     -14.738  -6.873   3.019  1.00  0.13
ATOM     78  CA  ARG    78     -14.033  -7.228   6.073  1.00  0.09
ATOM     79  CA  ALA    79     -12.705  -8.108   8.979  1.00  0.11
ATOM     80  CA  ALA    80     -11.061 -11.774   7.974  1.00  0.13
ATOM     81  CA  SER    81      -7.738 -10.688   9.446  1.00  0.12
ATOM     82  CA  VAL    82      -4.574 -11.165   7.683  1.00  0.13
ATOM     83  CA  GLU    83      -4.763 -15.234   7.452  1.00  0.16
ATOM     84  CA  GLU    84      -8.296 -15.000   5.423  1.00  0.12
ATOM     85  CA  ALA    85      -6.653 -11.928   3.118  1.00  0.09
ATOM     86  CA  VAL    86      -3.594 -14.503   2.138  1.00  0.13
ATOM     87  CA  ASP    87      -6.481 -17.509   1.797  1.00  0.13
ATOM     88  CA  ILE    88      -8.710 -14.787  -0.474  1.00  0.11
ATOM     89  CA  ALA    89      -5.276 -14.271  -2.712  1.00  0.17
ATOM     90  CA  ALA    90      -4.774 -18.384  -2.614  1.00  0.36
ATOM     91  CA  SER    91      -8.333 -18.902  -4.669  1.00  0.42
ATOM     92  CA  LEU    92      -7.371 -15.720  -6.983  1.00  0.30
ATOM     93  CA  ASP    93      -3.455 -16.699  -6.487  1.00  0.19
ATOM     94  CA  ALA    94      -1.671 -14.021  -7.784  1.00  0.18
ATOM     95  CA  GLU    95      -3.317 -10.692  -8.503  1.00  0.19
ATOM     96  CA  THR    96      -0.264  -8.404  -7.311  1.00  0.14
ATOM     97  CA  ALA    97       0.025  -9.777  -3.785  1.00  0.15
ATOM     98  CA  TYR    98      -0.620  -7.543  -0.998  1.00  0.13
ATOM     99  CA  VAL    99      -1.132  -4.200  -2.297  1.00  0.23
ATOM    100  CA  ILE   100      -0.966  -1.506  -0.190  1.00  0.11
ATOM    101  CA  GLY   101      -2.531  -1.223   2.801  1.00  0.25
ATOM    102  CA  GLY   102      -2.422   1.097   5.257  1.00  0.14
ATOM    103  CA  ALA   103       0.529   1.381   7.605  1.00  0.07
ATOM    104  CA  ALA   104      -1.673  -0.661  10.611  1.00  0.09
ATOM    105  CA  ILE   105      -1.582  -3.873   7.965  1.00  0.08
ATOM    106  CA  TYR   106       2.367  -2.959   7.278  1.00  0.09
ATOM    107  CA  ALA   107       3.557  -4.193  10.799  1.00  0.10
ATOM    108  CA  LEU   108       0.982  -7.500  10.661  1.00  0.12
ATOM    109  CA  PHE   109       2.544  -8.591   7.153  1.00  0.14
ATOM    110  CA  GLN   110       6.075  -6.967   8.091  1.00  0.17
ATOM    111  CA  PRO   111       8.606  -9.358   6.851  1.00  0.32
ATOM    112  CA  HIS   112       7.336 -10.215   3.388  1.00  0.55
ATOM    113  CA  LEU   113       6.034  -7.011   2.048  1.00  0.37
ATOM    114  CA  ASP   114       8.366  -5.670   0.215  1.00  0.80
ATOM    115  CA  ARG   115       9.895  -4.503  -2.537  1.00  0.47
ATOM    116  CA  MET   116       8.583  -1.425  -3.114  1.00  0.24
ATOM    117  CA  VAL   117       7.617   1.364  -2.603  1.00  0.11
ATOM    118  CA  LEU   118       6.582   4.168  -3.626  1.00  0.09
ATOM    119  CA  SER   119       7.262   7.081  -2.262  1.00  0.07
ATOM    120  CA  ARG   120       5.731   9.931  -2.799  1.00  0.06
ATOM    121  CA  VAL   121       6.623  12.966  -1.674  1.00  0.10
ATOM    122  CA  PRO   122      10.333  12.922  -0.490  1.00  0.12
ATOM    123  CA  GLY   123      10.018  14.831   2.473  1.00  0.20
ATOM    124  CA  GLU   124       9.070  15.876   5.434  1.00  0.21
ATOM    125  CA  TYR   125       5.555  16.227   6.338  1.00  0.27
ATOM    126  CA  GLU   126       5.900  15.538  10.155  1.00  0.15
ATOM    127  CA  GLY   127       3.823  12.716  10.678  1.00  0.26
ATOM    128  CA  ASP   128       5.013  10.198  12.903  1.00  0.15
ATOM    129  CA  THR   129       3.576   6.889  11.376  1.00  0.10
ATOM    130  CA  TYR   130       6.379   6.111   9.089  1.00  0.08
ATOM    131  CA  TYR   131       6.235   2.879   7.465  1.00  0.09
ATOM    132  CA  PRO   132       7.780   0.605  10.083  1.00  0.11
ATOM    133  CA  GLU   133      11.585   1.409   9.664  1.00  0.12
ATOM    134  CA  TRP   134      12.077  -1.654   7.220  1.00  0.16
ATOM    135  CA  ASP   135      15.540  -2.265   7.219  1.00  0.12
ATOM    136  CA  ALA   136      16.577   0.353   4.226  1.00  0.13
ATOM    137  CA  ALA   137      19.329  -1.930   2.960  1.00  0.17
ATOM    138  CA  GLU   138      17.469  -4.311   0.704  1.00  0.27
ATOM    139  CA  TRP   139      19.932  -4.863  -2.060  1.00  0.17
ATOM    140  CA  GLU   140      19.728  -2.472  -4.342  1.00  0.19
ATOM    141  CA  LEU   141      17.952  -1.057  -6.277  1.00  0.18
ATOM    142  CA  ASP   142      15.394  -1.016  -8.909  1.00  0.16
ATOM    143  CA  ALA   143      16.272   2.646  -9.369  1.00  0.16
ATOM    144  CA  GLU   144      14.244   4.646 -10.381  1.00  0.16
ATOM    145  CA  THR   145      14.046   7.910 -10.239  1.00  0.13
ATOM    146  CA  ASP   146      12.290   9.633 -12.648  1.00  0.13
ATOM    147  CA  HIS   147      12.660  13.170 -12.480  1.00  0.12
ATOM    148  CA  GLU   148      14.397  14.331  -9.319  1.00  0.10
ATOM    149  CA  GLY   149      12.758  13.362  -5.887  1.00  0.11
ATOM    150  CA  PHE   150       9.141  12.766  -7.237  1.00  0.10
ATOM    151  CA  THR   151       8.989   9.529  -8.476  1.00  0.08
ATOM    152  CA  LEU   152      10.105   6.898  -7.054  1.00  0.09
ATOM    153  CA  GLN   153      10.658   3.914  -7.066  1.00  0.11
ATOM    154  CA  GLU   154      11.671   1.209  -6.307  1.00  0.12
ATOM    155  CA  TRP   155      12.754  -1.537  -5.798  1.00  0.12
ATOM    156  CA  VAL   156      12.883  -4.573  -5.251  1.00  0.27
ATOM    157  CA  ARG   157      14.642  -6.997  -3.827  1.00  0.80
ATOM    158  CA  SER   158      18.359  -6.478  -4.918  1.00  0.38
ATOM    159  CA  ALA   159      18.073  -8.443  -8.008  1.00  1.12
ATOM    160  CA  SER   160      14.590  -9.542  -8.372  1.00  1.77
ATOM    161  CA  SER   161      12.425 -11.236  -6.566  1.00  2.43
ATOM    162  CA  ARG   162      12.742 -11.682  -3.424  1.00  3.25
ENDPDB
BEGASN
DEFINE NUMBER_OF_PARENTS 2
DEFINE KEY 1 PDB 3DFR (DHFR from Lactobacillus casei)
DEFINE KEY 2 PDB 1DYHA (DHFR, chain A from Escherichia coli)
DEFINE KEY 3 BUILT BKBONE (C-alpha to full backbone)
DEFINE KEY 4 BUILT SIDECH ("sidech" and CHARMM)
ASSIGN   1 M   - -   1 M 3 4
ASSIGN   2 E   1 T   - - 3 4
ASSIGN   3 L   - -   2 I 3 4
ASSIGN   4 V   2 A   3 S 3 4
ASSIGN   5 S   3 F   4 L 3 4
ASSIGN   6 V   4 L   5 I 3 4
ASSIGN   7 A   5 W   6 A 3 4
ASSIGN   8 A   6 A   7 A 3 4
ASSIGN   9 L   7 Q   8 L 3 4
ASSIGN  10 A   8 N   9 A 3 4
ASSIGN  11 E   9 R  10 V 3 4
ASSIGN  12 N  10 N  11 D 3 4
ASSIGN  13 R  11 G  12 R 3 4
ASSIGN  14 V  12 L  13 V 3 4
ASSIGN  15 I  13 I  14 I 3 4
ASSIGN  16 G  14 G  15 G 3 4
ASSIGN  17 R  15 K  16 M 3 4
ASSIGN  18 D  16 D  17 E 3 4
ASSIGN  19 G  17 G  18 N 3 4
ASSIGN  20 E  18 H  19 A 3 4
ASSIGN  21 L  19 L  20 M 3 4
ASSIGN  22 P  20 P  21 P 3 4
ASSIGN  23 W  21 W  22 W 3 4
ASSIGN  24 P   - -   - - 3 4
ASSIGN  25 S  22 H  23 N 3 4
ASSIGN  26 I  23 L  24 L 3 4
ASSIGN  27 P  24 P  25 P 3 4
ASSIGN  28 A  25 D  26 A 3 4
ASSIGN  29 D  26 D  27 D 3 4
ASSIGN  30 K  27 L  28 L 3 4
ASSIGN  31 K  28 H  29 A 3 4
ASSIGN  32 Q  29 Y  30 W 3 4
ASSIGN  33 Y  30 F  31 F 3 4
ASSIGN  34 R  31 R  32 K 3 4
ASSIGN  35 S  32 A  33 R 3 4
ASSIGN  36 R  33 Q  34 N 3 4
ASSIGN  37 I  34 T  35 T 3 4
ASSIGN  38 A  35 V  36 L 3 4
ASSIGN  39 D  36 G  37 D 3 4
ASSIGN  40 D  37 K  38 K 3 4
ASSIGN  41 P  38 I  39 P 3 4
ASSIGN  42 V  39 M  40 V 3 4
ASSIGN  43 V  40 V  41 I 3 4
ASSIGN  44 L  41 V  42 M 3 4
ASSIGN  45 G  42 G  43 G 3 4
ASSIGN  46 R  43 R  44 R 3 4
ASSIGN  47 T  44 R  45 H 3 4
ASSIGN  48 T  45 T  46 T 3 4
ASSIGN  49 F  46 Y  47 W 3 4
ASSIGN  50 E  47 E  48 E 3 4
ASSIGN  51 S  48 S  49 S 3 4
ASSIGN  52 M  49 F  50 I 3 4
ASSIGN  53 R  51 K  52 R 3 4
ASSIGN  54 D  52 R   - - 3 4
ASSIGN  55 D  53 P  53 P 3 4
ASSIGN  56 L  54 L  54 L 3 4
ASSIGN  57 P  55 P  55 P 3 4
ASSIGN  58 G  56 E  56 G 3 4
ASSIGN  59 S  57 R  57 R 3 4
ASSIGN  60 A  58 T  58 K 3 4
ASSIGN  61 Q  59 N  59 N 3 4
ASSIGN  62 I  60 V  60 I 3 4
ASSIGN  63 V  61 V  61 I 3 4
ASSIGN  64 M  62 L  62 L 3 4
ASSIGN  65 S  63 T  63 S 3 4
ASSIGN  66 R  64 H   - - 3 4
ASSIGN  67 S  65 Q  64 S 3 4
ASSIGN  68 E  66 E  65 Q 3 4
ASSIGN  69 R  67 D  66 P 3 4
ASSIGN  70 S   - -  67 G 3 4
ASSIGN  71 F  68 Y   - - 3 4
ASSIGN  72 S  69 Q  68 T 3 4
ASSIGN  73 V  70 A  69 D 3 4
ASSIGN  74 D  71 Q  70 D 3 4
ASSIGN  75 T  72 G  71 R 3 4
ASSIGN  76 A  73 A  72 V 3 4
ASSIGN  77 H  74 V  73 T 3 4
ASSIGN  78 R  75 V  74 W 3 4
ASSIGN  79 A  76 V  75 V 3 4
ASSIGN  80 A  77 H  76 K 3 4
ASSIGN  81 S  78 D  77 S 3 4
ASSIGN  82 V  79 V  78 V 3 4
ASSIGN  83 E  80 A  79 D 3 4
ASSIGN  84 E  81 A  80 E 3 4
ASSIGN  85 A  82 V  81 A 3 4
ASSIGN  86 V  83 F  82 I 3 4
ASSIGN  87 D  84 A  83 A 3 4
ASSIGN  88 I  85 Y  84 A 3 4
ASSIGN  89 A  86 A  85 C 3 4
ASSIGN  90 A  87 K   - - 3 4
ASSIGN  91 S  88 Q   - - 3 4
ASSIGN  92 L  89 H  86 G 3 4
ASSIGN  93 D  90 L  87 D 3 4
ASSIGN  94 A  91 D  88 V 3 4
ASSIGN  95 E  92 Q  89 P 3 4
ASSIGN  96 T  93 E  90 E 3 4
ASSIGN  97 A  94 L  91 I 3 4
ASSIGN  98 Y  95 V  92 M 3 4
ASSIGN  99 V  96 I  93 V 3 4
ASSIGN 100 I  97 A  94 I 3 4
ASSIGN 101 G  98 G  95 G 3 4
ASSIGN 102 G  99 G  96 G 3 4
ASSIGN 103 A 100 A  97 G 3 4
ASSIGN 104 A 101 Q  98 R 3 4
ASSIGN 105 I 102 I  99 V 3 4
ASSIGN 106 Y 103 F 100 Y 3 4
ASSIGN 107 A 104 T 101 E 3 4
ASSIGN 108 L 105 A 102 Q 3 4
ASSIGN 109 F 106 F 103 F 3 4
ASSIGN 110 Q 107 K 104 L 3 4
ASSIGN 111 P 108 D 105 P 3 4
ASSIGN 112 H 109 D 106 K 3 4
ASSIGN 113 L 110 V 107 A 3 4
ASSIGN 114 D 111 D 108 Q 3 4
ASSIGN 115 R 112 T 109 K 3 4
ASSIGN 116 M 113 L 110 L 3 4
ASSIGN 117 V 114 L 111 Y 3 4
ASSIGN 118 L 115 V 112 L 3 4
ASSIGN 119 S 116 T 113 T 3 4
ASSIGN 120 R 117 R 114 H 3 4
ASSIGN 121 V 118 L 115 I 3 4
ASSIGN 122 P 119 A 116 D 3 4
ASSIGN 123 G 120 G 117 A 3 4
ASSIGN 124 E 121 S 118 E 3 4
ASSIGN 125 Y 122 F 119 V 3 4
ASSIGN 126 E 123 E 120 E 3 4
ASSIGN 127 G 124 G 121 G 3 4
ASSIGN 128 D 125 D 122 D 3 4
ASSIGN 129 T 126 T 123 T 3 4
ASSIGN 130 Y 127 K 124 H 3 4
ASSIGN 131 Y 128 M 125 F 3 4
ASSIGN 132 P 129 I 126 P 3 4
ASSIGN 133 E 130 P 127 D 3 4
ASSIGN 134 W 131 L 128 Y 3 4
ASSIGN 135 D 132 N 129 E 3 4
ASSIGN 136 A 133 W 130 P 3 4
ASSIGN 137 A 134 D 131 D 3 4
ASSIGN 138 E 135 D 132 D 3 4
ASSIGN 139 W 136 F 133 W 3 4
ASSIGN 140 E 137 T 134 E 3 4
ASSIGN 141 L 138 K 135 S 3 4
ASSIGN 142 D 139 V 136 V 3 4
ASSIGN 143 A 140 S 137 F 3 4
ASSIGN 144 E 141 S 138 S 3 4
ASSIGN 145 T 142 R 139 E 3 4
ASSIGN 146 D 143 T 140 F 3 4
ASSIGN 147 H 144 V 141 H 3 4
ASSIGN 148 E 145 E 142 D 3 4
ASSIGN 149 G 152 T 150 S 3 4
ASSIGN 150 F 153 H 151 Y 3 4
ASSIGN 151 T 154 T 152 C 3 4
ASSIGN 152 L 155 Y 153 F 3 4
ASSIGN 153 Q 156 E 154 E 3 4
ASSIGN 154 E 157 V 155 I 3 4
ASSIGN 155 W 158 W 156 L 3 4
ASSIGN 156 V 159 Q 157 E 3 4
ASSIGN 157 R 160 K 158 R 3 4
ASSIGN 158 S 161 K 159 R 3 4
ASSIGN 159 A 162 A   - - 3 4
ASSIGN 160 S   - -   - - 3 4
ASSIGN 161 S   - -   - - 3 4
ASSIGN 162 R   - -   - - 3 4
ENDASN
METHOD
REMARK ---- Multiple alignment ----
SEQALN Program MSAP: multiple sequence/structure alignment
SEQALN (Orengo, C. A. et al., Prot. Engng. 6:485-500 (1993))
SEQALN SCORING_MATRIX PAM120
SEQALN The alignment was constructed from the target, the
SEQALN two parent structure sequences and the following
SEQALN homologous sequences (SwissProt codes):
SEQALN DYR3_SALTY,DYRA_CITER,DYRA_HAEIN,DYRA_STAAU,DYR_BACSU
REMARK
REMARK ---- Fold generation ----
COREBD DRAGON Program DRAGON-4: Distance Regularisation Algorithm
COREBD DRAGON for Geometry OptimisatioN, Version 4.16.1
COREBD DRAGON Generates C-alpha traces using restraints
COREBD DRAGON derived from multiple alignments
COREBD DRAGON (Aszodi,A. et al., J.Mol.Biol. 251:308 (1995))
COREBD DRAGON (Aszodi,A. and Taylor,W.R., Folding&Design 1:325 (1996))
REMARK
REMARK ---- C-alpha to full main-chain conversion ----
COREBD BKBONE 20 C-alpha traces generated by DRAGON-4 were averaged,
COREBD BKBONE and peptide groups
COREBD BKBONE were inserted between the C-alpha positions
COREBD BKBONE using local software ('sidech', unpublished).
REMARK The averaged C-alpha structures are given as PDBSET 1
REMARK and represent the "raw output" of DRAGON-4.
REMARK
REMARK ---- Sidechain generation ----
SIDEBD SIDECH Partial side chains were built by averaging the
SIDEBD SIDECH topologically equivalent side chains in the parent
SIDEBD SIDECH structures (using the same
SIDEBD SIDECH multiple alignment as DRAGON-4)
SIDEBD SIDECH by the program 'sidech' (unpublished).
SIDEBD SIDECH The rest of the missing side-chain atoms
SIDEBD SIDECH and polar hydrogens
SIDEBD SIDECH were automatically generated by CHARMM, Version 23.1
SIDEBD SIDECH as supplied by Molecular Simulations, Inc.
SIDEBD SIDECH as part of the QUANTA package
REMARK
REMARK ---- Refinement ----
REFINE QUANTA Program QUANTA, Version 4.1
REFINE EMIN Initial geometry regularisation
REFINE EMIN using adopted-basis Newton-Raphson
REFINE EMIN minimisation in vacuo
REFINE MDANNEAL Molecular dynamics/simulated annealing I:
REFINE MDANNEAL starting C-alpha positions restrained
REFINE MDANNEAL by harmonic force
REFINE MDANNEAL heat 0K->1000K 5 ps, equilibrate 2ps,
REFINE MDANNEAL cool 1000K->0K 10 ps, in vacuo
REFINE EMIN 1000 steps of unrestrained adopted-basis
REFINE EMIN Newton-Raphson minimisation
REFINE MDANNEAL Molecular dynamics/simulated annealing II:
REFINE MDANNEAL no restraints, 8 A thick water layer
REFINE MDANNEAL heat 0K->300K 5 ps,
REFINE MDANNEAL equilibrate 2ps,
REFINE MDANNEAL cool 300K->0K 10 ps
REFINE EMIN 1000 steps of adopted-basis
REFINE EMIN Newton-Raphson minimisation
REFINE EMIN with solvent layer held fixed
REMARK The result of this final minimisation
REMARK is given as PDBSET 2,
REMARK without the water coordinates.
ENDMET


